HHsearch alignment for GI: 255764496 and conserved domain: TIGR03674
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=93.44 E-value=0.084 Score=32.55 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=34.1
Q ss_pred CCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 71004888798999999998088898993898888627899989999999985478
Q gi|255764496|r 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 (616)
Q Consensus 555 S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~~ 610 (616)
T Consensus 236 DY~~gI~GIG~k~A~klIkk~~~ie~i~~~~~----~~~~-~---~~~~r~lF~~p 283 (338)
T TIGR03674 236 DYNEGVKGIGPKTALKLIKEHGDLEKVLKARG----EDIE-N---YDEIREFFLNP 283 (338)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCC----CCCC-C---HHHHHHHHCCC
T ss_conf 56789998568999999998599999998656----8877-8---99999984899