HHsearch alignment for GI: 255764496 and conserved domain: cd00080
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif. HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.
Probab=95.15 E-value=0.02 Score=36.97 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=27.4
Q ss_pred CHHCCCCCCHHHHHHHHHHHCCHHHHHHCC
Q ss_conf 100488879899999999808889899389
Q gi|255764496|r 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSS 585 (616)
Q Consensus 556 ~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As 585 (616)
T Consensus 23 nipGV~GIG~ktA~~ll~~~~~l~~i~~~~ 52 (75)
T cd00080 23 NIPGVPGIGPKTALKLLKEYGSLENLLENL 52 (75)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 887758637999999999909999999838