HHsearch alignment for GI: 255764496 and conserved domain: cd00141
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=90.15 E-value=0.51 Score=26.86 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=6.4
Q ss_pred HCCHHHHHHCCCC
Q ss_conf 3898888627899
Q gi|255764496|r 583 RSSPETLASIEGI 595 (616)
Q Consensus 583 ~As~eeL~~v~gi 595 (616)
T Consensus 287 ~~sE~~If~~Lgl 299 (307)
T cd00141 287 GETEEEIFEALGL 299 (307)
T ss_pred CCCHHHHHHHCCC
T ss_conf 9999999998599