HHsearch alignment for GI: 255764496 and conserved domain: pfam04493
>pfam04493 Endonuclease_5 Endonuclease V. Endonuclease V is specific for single-stranded DNA or for duplex DNA that contains uracil or that is damaged by a variety of agents.
Probab=97.42 E-value=0.00018 Score=51.72 Aligned_cols=115 Identities=19% Similarity=0.141 Sum_probs=68.4
Q ss_pred HHHHHHHCCCC------CCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH--HHH
Q ss_conf 99987515664------3516999707443775404888885168728032321102444455411689989999--999
Q gi|255764496|r 367 KDFTKKFALPH------IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--ERR 438 (616)
Q Consensus 367 ~~Lk~~L~L~~------~p~rIE~fDiSh~~G~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi--~RR 438 (616)
T Consensus 3 ~~l~~ki~~~~~~~~~~~l~~VaGvDvSf~~~~~~~aa~Vvl~~p~l~~-v~~~~~~~~~~fPYIPG~LaFRE~p~~l~a 81 (205)
T pfam04493 3 EELQKKISLSPDESEDSELRYVAGVDVSYDKETRAVAALVVLDFPSLEV-IEKKVIRGEISFPYIPGFLAFRELPLLLKA 81 (205)
T ss_pred HHHHHCEECCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCCCE-EEEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 5742107736899997735699999973757984999999998899839-999999976236655403433101899999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 977531311123333333345457984899809-858999999999975887787189997187
Q gi|255764496|r 439 FSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG-GKGQLSAAQGVLKKLNVENRITIISIAKGP 501 (616)
Q Consensus 439 ~~r~~~~~~~l~~~~~~~~~~~~~~PDLilIDG-GkgQln~a~~vl~~l~i~~~i~viglaK~~ 501 (616)
T Consensus 82 ~~~L~------------------~~PDvllvDG~Gi~HPR~~G-lAsHlGV~l~~PTIGVAK~~ 126 (205)
T pfam04493 82 LKKLY------------------DEPDVLLVDGNGIAHPRRFG-LATHAGVLLDKPTIGVAKKL 126 (205)
T ss_pred HHHCC------------------CCCCEEEECCCCCCCCCCCC-HHEEEEEECCCCCCCCCCCE
T ss_conf 99657------------------79999998787643762426-01035665287832301430