HHsearch alignment for GI: 255764496 and conserved domain: pfam04493

>pfam04493 Endonuclease_5 Endonuclease V. Endonuclease V is specific for single-stranded DNA or for duplex DNA that contains uracil or that is damaged by a variety of agents.
Probab=97.42  E-value=0.00018  Score=51.72  Aligned_cols=115  Identities=19%  Similarity=0.141  Sum_probs=68.4

Q ss_pred             HHHHHHHCCCC------CCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH--HHH
Q ss_conf             99987515664------3516999707443775404888885168728032321102444455411689989999--999
Q gi|255764496|r  367 KDFTKKFALPH------IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--ERR  438 (616)
Q Consensus       367 ~~Lk~~L~L~~------~p~rIE~fDiSh~~G~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi--~RR  438 (616)
T Consensus         3 ~~l~~ki~~~~~~~~~~~l~~VaGvDvSf~~~~~~~aa~Vvl~~p~l~~-v~~~~~~~~~~fPYIPG~LaFRE~p~~l~a   81 (205)
T pfam04493         3 EELQKKISLSPDESEDSELRYVAGVDVSYDKETRAVAALVVLDFPSLEV-IEKKVIRGEISFPYIPGFLAFRELPLLLKA   81 (205)
T ss_pred             HHHHHCEECCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCCCE-EEEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             5742107736899997735699999973757984999999998899839-999999976236655403433101899999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             977531311123333333345457984899809-858999999999975887787189997187
Q gi|255764496|r  439 FSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG-GKGQLSAAQGVLKKLNVENRITIISIAKGP  501 (616)
Q Consensus       439 ~~r~~~~~~~l~~~~~~~~~~~~~~PDLilIDG-GkgQln~a~~vl~~l~i~~~i~viglaK~~  501 (616)
T Consensus        82 ~~~L~------------------~~PDvllvDG~Gi~HPR~~G-lAsHlGV~l~~PTIGVAK~~  126 (205)
T pfam04493        82 LKKLY------------------DEPDVLLVDGNGIAHPRRFG-LATHAGVLLDKPTIGVAKKL  126 (205)
T ss_pred             HHHCC------------------CCCCEEEECCCCCCCCCCCC-HHEEEEEECCCCCCCCCCCE
T ss_conf             99657------------------79999998787643762426-01035665287832301430