>pfam08459 UvrC_HhH_N UvrC Helix-hairpin-helix N-terminal. This domain is found in the C subunits of the bacterial and archaeal UvrABC system which catalyses nucleotide excision repair in a multi-step process. UvrC catalyses the first incision on the fourth or fifth phosphodiester bond 3' and on the eighth phosphodiester bond 5' from the damage that is to be excised. The domain described here is found to the N-terminus of a helix hairpin helix (pfam00633) motif and also co-occurs with the pfam01541 catalytic domain which is found at the N-terminus of the same proteins.

Probab=100.00 E-value=0 Score=401.24 Aligned_cols=154 Identities=44% Similarity=0.748 Sum_probs=141.6 Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 98751566435169997074437754048888851687280323211024444554116899899999999775313111 Q gi|255764496|r 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448 (616) Q Consensus 369 Lk~~L~L~~~p~rIE~fDiSh~~G~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~r~~~~~~~ 448 (616) T Consensus 1 L~~~l~L~~~p~rIE~fDiSh~~G~~~V~s~Vvf~~g~~~K~~YRkf~Ik~--~-~~dD~~~m~evl~RR~~~~~~~~~- 76 (154) T pfam08459 1 LAELLGLPKLPHRIECFDISHIQGTDTVGSMVVFEDGKPDKSEYRRYNIKG--T-PGDDYASMREVLTRRFSRLLKEKL- 76 (154) T ss_pred CHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCC--C-CCCHHHHHHHHHHHHHHHHHHCCC- T ss_conf 967869899988899997875579773699999948975856624323789--9-997899999999999986541168- Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCHHHH Q ss_conf 23333333345457984899809858999999999975887787189997187767663489817983488579989999 Q gi|255764496|r 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528 (616) Q Consensus 449 l~~~~~~~~~~~~~~PDLilIDGGkgQln~a~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l~~~~~~l~ 528 (616) T Consensus 77 -------------~~PDLilIDGGkgQl~~a~~~l~~~~~~--i~vi~iaK~~~~~~~-~i~~~~~~~~i~l~~~~~~~~ 140 (154) T pfam08459 77 -------------PLPDLILIDGGKGQLNAAKEVLEELGLD--IPVIGLAKGEEHKTE-KLFLPGGPEPIPLPPDSPALH 140 (154) T ss_pred -------------CCCCEEEECCCHHHHHHHHHHHHHCCCC--CEEEEEEECCCCCCC-EEEECCCCCEEECCCCCHHHH T ss_conf -------------9998899759989999999999985999--529999735655541-477669983676599998999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99988787788788 Q gi|255764496|r 529 FIQRLRDEAHRFAI 542 (616) Q Consensus 529 ~Lq~iRDEaHRFAi 542 (616) T Consensus 141 ~Lq~iRDEaHRFAI 154 (154) T pfam08459 141 LLQRIRDEAHRFAI 154 (154) T ss_pred HHHHHHHHHHCCCC T ss_conf 99999870752369

HHsearch alignment for GI: 255764496 and conserved domain: pfam08459