HHsearch alignment for GI: 255764496 and conserved domain: smart00475
>smart00475 53EXOc 5'-3' exonuclease.
Probab=96.83 E-value=0.0021 Score=44.04 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHCC---C-CHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 88788989986432147---7-100488879899999999808889899389888862789998999999998
Q gi|255764496|r 538 HRFAITTHRKRRKKAAY---S-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606 (616)
Q Consensus 538 HRFAi~~hRk~r~k~~~---S-~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~ 606 (616)
T Consensus 165 e~~gv~P~q~~d~~aL~GD~sDnIpGV~GIG~KtA~kLL~~ygsle~i~~~~-d~---i---~~k~~~~l~~~ 230 (259)
T smart00475 165 EKYGLTPEQIIDYKALMGDSSDNIPGVPGIGEKTAAKLLKEFGSLENILENL-DK---L---KKKLREKLLAH 230 (259)
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH-HH---C---CHHHHHHHHHH
T ss_conf 8848998998637640464535899999847899999999839999999839-85---4---88999999977