HHsearch results for GI: 255764496 and protein with PDBid: 1yd0_A

>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=99.95  E-value=3.2e-28  Score=221.49  Aligned_cols=87  Identities=34%  Similarity=0.652  Sum_probs=82.7

Q ss_pred             HHHCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf             12586788625888699888899601258788876137887787999999734442999828719999999988776187
Q gi|255764496|r    3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKP   82 (616)
Q Consensus         3 ~~~lP~~pGvY~~~~~~~~iiYvGKaknL~~Rv~syf~~~~~~~k~~~l~~~~~~ie~~~t~~e~eAlilE~~lIk~~~P   82 (616)
                      .+.+|++||||+|.| +|+|||||||+|||+||+|||++  .+.|+..|+.++.+|||++|+||.|||+||++||++|+|
T Consensus         9 l~~lP~~pGVY~f~d-~~~vLYVGKAknLr~Rv~syf~~--~~~k~~~l~~~~~~i~~~~t~se~eAlllE~~lIk~~kP   85 (96)
T 1yd0_A            9 ILLAPEEPGVYIFKN-KGVPIYIGKAKRLSNRLRSYLNP--QTEKVFRIGEEADELETIVVMNEREAFILEANLIKKYRP   85 (96)
T ss_dssp             HHHCCSSCEEEEEEE-TTEEEEEEEESSHHHHHHGGGSC--SSHHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHHHHCC
T ss_pred             HHHCCCCCEEEEECC-CCCEEEEECCHHHHHHHHHHHCC--CHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             985899986899879-99478972608899999988501--118888888762204568418999999999999998589


Q ss_pred             CCEECCCCCC
Q ss_conf             2003364689
Q gi|255764496|r   83 RFNILLRDDK   92 (616)
Q Consensus        83 ~yNi~LkDdk   92 (616)
                      +||++|||||
T Consensus        86 ~yN~~lkd~k   95 (96)
T 1yd0_A           86 KYNVRLKDTD   95 (96)
T ss_dssp             TTCC------
T ss_pred             CCHHHCCCCC
T ss_conf             5176605789