HHsearch results for GI: 255764496 and protein with PDBid: 3c65_A
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=100.00 E-value=0 Score=561.92 Aligned_cols=224 Identities=35% Similarity=0.609 Sum_probs=207.9
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998751566435169997074437754048888851687280323211024444554116899899999999775313
Q gi|255764496|r 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN 445 (616)
Q Consensus 366 l~~Lk~~L~L~~~p~rIE~fDiSh~~G~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~r~~~~ 445 (616)
+.+|++.|+|+. |+|||||||||++|+++|||||||++|+|.|+.||+|||++ +.++|||+||+||++|||+++.++
T Consensus 2 ~~~L~~~L~l~~-p~rIE~fDiSh~~G~~~V~s~Vvf~~g~~~K~~YR~f~ik~--~~~~DDy~~m~Evl~Rr~~r~~~~ 78 (226)
T 3c65_A 2 SHMLGERLGIPA-PRRIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVKT--VAGPNDYETMREVVRRRYTRVLKE 78 (226)
T ss_dssp HHHHHHHHTSCC-CSEEEEEEEEESSSSSCEEEEEEEETTEECGGGCEEEECCC--CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC-CCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 789999858499-88799997876589885599999978953867660226567--889974999999999987776631
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCH
Q ss_conf 11123333333345457984899809858999999999975887787189997187767663489817983488579989
Q gi|255764496|r 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525 (616)
Q Consensus 446 ~~~l~~~~~~~~~~~~~~PDLilIDGGkgQln~a~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l~~~~~ 525 (616)
+. ++|||||||||+||||+|.++|++.+.. .|||+||||+++|++. +.+++..++++.|+++++
T Consensus 79 ~~--------------~~PDLilIDGGkgQl~~a~~~l~~~~~~-~i~ii~iaK~~~~~~~-~~~~~~~~~~i~l~~~s~ 142 (226)
T 3c65_A 79 GL--------------PLPDLIIIDGGKGHLSAVRDVLENELGL-DVPLAGLAKDEKHRTS-ELLAGDPPDVVPLDRQSQ 142 (226)
T ss_dssp TC--------------CCCSEEEESSCHHHHHHHHHHHHHTSCC-CCCEEEC--------C-CCEETTTTEECCCCTTSH
T ss_pred CC--------------CCCCEEEECCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC-CCCCCCCCCCEECCCCCH
T ss_conf 89--------------9999899789889999999999974788-8544430245211343-220158754230687888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 999999887877887889899864321-4771004888798999999998088898993898888627899989999999
Q gi|255764496|r 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604 (616)
Q Consensus 526 ~l~~Lq~iRDEaHRFAi~~hRk~r~k~-~~S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~ 604 (616)
+|+|||+||||||||||+|||++|+|. +.|.||+||||||+|+++||+||||+++|++||.|||++| |||+++|++||
T Consensus 143 ~l~lLq~iRDEaHRFAi~~hRk~r~k~~~~S~Ld~I~GIG~~~~~~Ll~~Fgs~~~i~~As~eeL~~v-gI~~~~A~~I~ 221 (226)
T 3c65_A 143 EFYLLQRIQDEVHRFAVMFHRKTRQKTMFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIY 221 (226)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHC-CCCHHHHHHHH
T ss_conf 99999999999999999999998740320371102688699999999998189999973899999876-99999999999
Q ss_pred HHHCC
Q ss_conf 98547
Q gi|255764496|r 605 NHFHK 609 (616)
Q Consensus 605 ~~l~~ 609 (616)
++||+
T Consensus 222 ~~l~e 226 (226)
T 3c65_A 222 EKLHE 226 (226)
T ss_dssp -----
T ss_pred HHHCC
T ss_conf 99629