RPSBLAST alignment for GI: 255764496 and conserved domain: TIGR00194

>gnl|CDD|161756 TIGR00194, uvrC, excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments. Length = 574

 Score =  449 bits (1156), Expect = e-126
 Identities = 224/592 (37%), Positives = 337/592 (56%), Gaps = 32/592 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P+ PG Y M D  G+VLYVGKA NL+KR+ SY   NN + +   ++ QI +I + +T
Sbjct: 6   KNLPDKPGCYLMKDRNGQVLYVGKAKNLKKRVSSYFRENN-SAKTQALVKQIADIEYILT 64

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E EAL+LEAN+IK+ +PR+N+LL+DDK +PYI IT +   P L   R     +G YFG
Sbjct: 65  KNENEALILEANLIKQYQPRYNVLLKDDKGYPYIYITHEKY-PRLLITRKLKQDKGKYFG 123

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF +  A+ +T++ L + F LR CA     +R RPCL +QI RC GPC  EI+ E+Y + 
Sbjct: 124 PFTNAFALRETLDLLLKLFPLRKCAK---HNRNRPCLYYQIGRCLGPCVKEITEEEYQQI 180

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI-QNHNDSIYNR- 241
           V + + F +G    + +++ + M +A+   ++E A   RD++AA+  + +  + S+ +  
Sbjct: 181 VEKIELFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLI 240

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296
            +D  ++  + N+A IQ  F   G+  G   F         +  + + FL QFY     +
Sbjct: 241 DLDIIAVAFDGNVAAIQVFFIRQGKLIGRDQFDFSLPGTDLDELVET-FLIQFYQQGYQN 299

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  IL+S   E+  LLE    +Q G K+ +  PK+G+K+K++E A+ NA  +  QK 
Sbjct: 300 RLIPSEILVSLSLEDLKLLEDLLSEQRGRKINVHQPKKGDKKKLLELAIKNAKYALKQKW 359

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +        L+D      LP I KRIEI+D SHI G   VG MVV  +   +K  YR++N
Sbjct: 360 TQFERKTQALEDLASLLNLPKI-KRIEIFDISHIDGSQTVGSMVVFEDGKPLKASYRRYN 418

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  N +   DD A MR VL RR+S + K         K         PD++++DGGKGQL
Sbjct: 419 I--NSITGGDDYAAMREVLRRRYSSIQK---------KNNL----PLPDLILIDGGKGQL 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +AA  VLK L V N+  +I +AK  +    +     K+G  + LN   P L  +Q +RDE
Sbjct: 464 NAALEVLKSLGVVNKPIVIGLAKAKRHETDIFLIGDKQGINIDLN--SPALQLLQHIRDE 521

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           AHRFAI+ HRK+R KA+  SPL +I G+G  R + LL+ FG++K I ++S E
Sbjct: 522 AHRFAISFHRKKRLKASLQSPLLKIPGVGEKRVQKLLKYFGSLKGIKKASVE 573