BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C
[Candidatus Liberibacter asiaticus str. psy62]
         (616 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 616

 Score = 1287 bits (3331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/616 (100%), Positives = 616/616 (100%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF
Sbjct: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS
Sbjct: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY
Sbjct: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN
Sbjct: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
           RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP
Sbjct: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI
Sbjct: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN
Sbjct: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ
Sbjct: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
           GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF
Sbjct: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA
Sbjct: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600

Query: 601 CKIYNHFHKNTSHTPT 616
           CKIYNHFHKNTSHTPT
Sbjct: 601 CKIYNHFHKNTSHTPT 616


>gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 192

 Score = 32.3 bits (72), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 6   MPECPGVYQMLDI-----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI-NNIR 59
           MP    V+ +L+I     AG+ L+   AY++ ++I++   S+ +TH +T       N++R
Sbjct: 29  MPYFMLVFAILEISLSFTAGQ-LFESAAYDVARKIRTGEISSKNTHSLTEFRRVFCNDLR 87

Query: 60  FTVTCTEVEA-----LLLEANMIKRLKPRFNILLRDDKS 93
               C+E E      L L+   IK L+     + R DKS
Sbjct: 88  VLFNCSENEIGRPYDLYLDVKQIKSLQEITETVPRKDKS 126


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 28.9 bits (63), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 163 QIKRCSGPCTGEISSEKYMEFVH---EAKKFLSGGNHNLKEKIARNMNQATLKEDYESA- 218
           +++R  GP   +I  EK +  +    EAK         L E++  + N +   + Y+ A 
Sbjct: 688 RVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAV 747

Query: 219 -IIHRDRLAALSHIQNHNDSIYNR 241
            I+ RD  A++S+IQ      YNR
Sbjct: 748 DIVLRDNKASISYIQRRLGIGYNR 771


>gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 292

 Score = 27.3 bits (59), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 15/70 (21%)

Query: 197 NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACI 256
           N+  +I     QA ++ DY  A++++D+L  L                 +L+    + C+
Sbjct: 209 NVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQ---------------ALFMEPAVCCV 253

Query: 257 QTCFFHFGQN 266
           +      G+N
Sbjct: 254 KYALSRLGRN 263


>gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 220

 Score = 26.6 bits (57), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           ++   P    ++D+ G++ ++ K   L    KS++    HT ++   I  + +I
Sbjct: 159 ELTGTPSPNGLIDLWGQIWFLDKGKRLGLSFKSFVERWFHTQQVGSSIGAVKHI 212


>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 343

 Score = 24.6 bits (52), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLAC--IQTCFFH 262
           + A+++++N N +I   +   S++H+    C  +  C +H
Sbjct: 234 IPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYH 273


>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 24.3 bits (51), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 26  GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL-LLEANMIKRLK 81
           G AY++   +KS++ S     R+TH + Q  +    V  T   A  L E+  ++R++
Sbjct: 124 GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 24.3 bits (51), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 326 KVKITVPKQGEKRKIIEQALINAHRS-HTQKLSTEISHQM 364
           +  I  P QG    I  +A+I+ H+S    KL+T++  Q+
Sbjct: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 23.9 bits (50), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521
           +LKK N+  +  I +++ G  R   + K  + + + L+L+
Sbjct: 106 LLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILD 145


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,593
Number of Sequences: 1233
Number of extensions: 15958
Number of successful extensions: 46
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 10
length of query: 616
length of database: 328,796
effective HSP length: 79
effective length of query: 537
effective length of database: 231,389
effective search space: 124255893
effective search space used: 124255893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)