HHsearch alignment for GI: 255764497 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.88 E-value=6.9e-20 Score=160.73 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHH
Q ss_conf 89999999999999999997310000112454366-7899985446677544469999999998315-566504799999
Q gi|255764497|r 378 YVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSY-YHLNPNLWLSLL 455 (587)
Q Consensus 378 ~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~-~~~~~~~~~~~~ 455 (587)
T Consensus 62 ~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivla 141 (267)
T COG1177 62 RLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLA 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 89999999999999999999999999999999704026899999997424150999999999999986887529999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999739989999999749887899899985745778999999999999999999998505564422
Q gi|255764497|r 456 MIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLR 535 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~ 535 (587)
T Consensus 142 H~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~---- 217 (267)
T COG1177 142 HIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPG---- 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC----
T ss_conf 9999866899999999973896799999876998888989976975279999999999999986778631132899----
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37837999999973497989999999999999999997
Q gi|255764497|r 536 TTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 536 ~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
T Consensus 218 ~~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~ 255 (267)
T COG1177 218 FTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLA 255 (267)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87218999998655898199999999999999999999