HHsearch alignment for GI: 255764497 and conserved domain: COG4239
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=98.66 E-value=5e-05 Score=52.93 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=87.5
Q ss_pred HHHHHHHCCCCCHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf 9997310000112454366-78999854466775444699999999983155665047999999999---9999999999
Q gi|255764497|r 394 IIIASIIWIPVGIWIGFRP-HISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLSLLMIFG---TQWYILFNVI 469 (587)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 469 (587)
T Consensus 151 T~~SaliGv~~GA~qGyfgg~vdL~~QRfIEvws~mP~lyllii~as~~~p~----f~~ll~i~llf~Wm~lv~vvR--a 224 (341)
T COG4239 151 TLISALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASIFQPN----FWWLLGIMLLFGWMSLVGVVR--A 224 (341)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHH--H
T ss_conf 9999999998887753413004887705999984472999999999996854----799999999999999999999--9
Q ss_pred HHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99973998999999974988789989998574577899999999999999999999850556442237837999999973
Q gi|255764497|r 470 AGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIHLRTTGLGAYIAESTEK 549 (587)
Q Consensus 470 ~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~~~~~GlG~~i~~~~~~ 549 (587)
T Consensus 225 efLr~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTltsLdFLgfglp~gsp-SLGELl~qgk~n 303 (341)
T COG4239 225 EFLRARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTLTSLDFLGFGLPPGSP-SLGELLNQGKNN 303 (341)
T ss_pred HHHHHCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHC
T ss_conf 9998602688999997398865030213262988999998789870633230016665269999996-789999976524
Q ss_pred CCHHHHH
Q ss_conf 4979899
Q gi|255764497|r 550 GSFPEVV 556 (587)
Q Consensus 550 ~~~~~~~ 556 (587)
T Consensus 304 lqapWlg 310 (341)
T COG4239 304 LQAPWLG 310 (341)
T ss_pred CCCCHHH
T ss_conf 7784255