HHsearch alignment for GI: 255764497 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.97 E-value=4.7e-29 Score=227.27 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 00688999999999999999999731000011245436678999854466775444699999999983155665047999
Q gi|255764497|r 374 QDVLYVIWLGCITMFRVVVLIIIASIIWIPVGIWIGFRPHISSKIQPFAQLLAAFPANVFFPLVVSCVSYYHLNPNLWLS 453 (587)
Q Consensus 374 ~~~~~l~~~~~~tl~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 453 (587)
T Consensus 79 i~~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~~~----ai 154 (267)
T TIGR03416 79 IINQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGMVP----GL 154 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH----HH
T ss_conf 99871589999999999999999999999999999816999999999998743154679999999994887056----99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999997399899999997498878998999857457789999999999999999999985055644
Q gi|255764497|r 454 LLMIFGTQWYILFNVIAGASAFPNDFKEVASSFHITGWRWWRYIILPGIFPYYVTGAITACGGAWNASIVSEVASWGHIH 533 (587)
Q Consensus 454 ~~~~~~~~~~~~~~~~~gl~~i~~~l~eaa~~lGa~~~~~~~~V~LPl~~P~i~~g~~~a~~~a~~~~~~ae~~~~~~~~ 533 (587)
T Consensus 155 ia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa---- 230 (267)
T TIGR03416 155 ISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGA---- 230 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_conf 9999999889999999999856768999999839989889799418415899999999999999999999999678----
Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2237837999999973497989999999999999999997
Q gi|255764497|r 534 LRTTGLGAYIAESTEKGSFPEVVLGVLIMCCFVLALNRFL 573 (587)
Q Consensus 534 ~~~~GlG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 573 (587)
T Consensus 231 ---~GLG~~v~~~l~~~~~g~~l~~gi~iv~lAiilDRlf 267 (267)
T TIGR03416 231 ---DGLGVPVVRALNTVNIALGFEAGLAIVVLAIVLDRIF 267 (267)
T ss_pred ---CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ---8536999999863356889999999999999997049