HHsearch alignment for GI: 255764497 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.79 E-value=1.1e-16 Score=137.55 Aligned_cols=167 Identities=25% Similarity=0.339 Sum_probs=143.4
Q ss_pred HHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999997--150267899999999974328999999999984014554210479999999998535999999999972
Q gi|255764497|r 83 TFVYATLAA--KSRRLGMVLVPILDIMQSIPILGFLTFTVVYFMNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCN 160 (587)
Q Consensus 83 g~~~a~~~~--~~~~~~~~~~~~l~~~~~iP~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~ 160 (587)
T Consensus 1 Gv~lG~~~a~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 77 (183)
T pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILG---HGILPAIILALLGWAGYARLIRRAALRS 77 (183)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9869999995078589999999999999834999999999998423667---8999999999999999999999999970
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99899999996288820123655526215789999999999998998999997354442036788999999863113256
Q gi|255764497|r 161 IPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAIKEQDLLA 240 (587)
Q Consensus 161 i~~~l~eaa~~~Ga~~~~~f~~v~lP~~~P~i~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~~~~~~ 240 (587)
T Consensus 78 ~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~------~GlG~~~~~a~~~~d~~~ 151 (183)
T pfam00528 78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW------PGLGLLLIEAILGYDYPE 151 (183)
T ss_pred CCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHH
T ss_conf 68999999998699843412992189899999999999999999999999999368------967599999999770999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|255764497|r 241 ILYAMLTMLGVIFLYDQL 258 (587)
Q Consensus 241 ~~~~~~~i~~~~~~~~~~ 258 (587)
T Consensus 152 ~~~~~~~~~~~~~~~~~~ 169 (183)
T pfam00528 152 IQGPVLAAALILLLLNLL 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999