HHsearch alignment for GI: 255764498 and conserved domain: COG0582

>COG0582 XerC Integrase [DNA replication, recombination, and repair].
Probab=99.86  E-value=9.5e-21  Score=139.95  Aligned_cols=221  Identities=36%  Similarity=0.498  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             999999999977998435322101123343210001222222122221-2122211122332024699998643200125
Q gi|255764498|r   41 HLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLE-LPKKNHILPKTLHKDTIANLLEQAKIEAENP  119 (300)
Q Consensus        41 ~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i~-~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~  119 (300)
T Consensus        72 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----  141 (309)
T COG0582          72 ELRGKLETALRE--STLTRVFRLAALRGFFAYLDNPG----APLKALREKPKRRKKLPKALTAEEVEALLEALDRY----  141 (309)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH----
T ss_conf             888999999764--47779999999988888621631----04666531134454454548999999999998750----


Q ss_pred             CCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             6102776543110001221001343334320000011110001112---2211111000012478875323210012467
Q gi|255764498|r  120 APGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQG---KGNKERLVILSPSALHALQMYKKTCSSMKMT  196 (300)
Q Consensus       120 ~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~---K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~  196 (300)
T Consensus       142 ----~~~~~~~~~~~---~tG~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--  212 (309)
T COG0582         142 ----RDALRLALLIL---LTGLRVSELLGLRWSDIDLENGTIWIRGTKTKGRKERRVPLSEQALEALKKYLLIRRPRE--  212 (309)
T ss_pred             ----HHHHHHHHHHH---HHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCC--
T ss_conf             ----57899999998---718779999827666505456727996135556651589605999999999998544433--


Q ss_pred             CCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf             7752001233322222----111111101234420146676425988588999999985888889999855899899899
Q gi|255764498|r  197 GNDLWLFPSSTKTGHL----SRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQI  272 (300)
Q Consensus       197 ~~~~~lf~~~~~~~~~----s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~  272 (300)
T Consensus       213 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~lRht~~~~~~~~~-~~~~~~~~~gH~~~~~~~~  285 (309)
T COG0582         213 ----YLFLSLRGPRLSRSALTINRLLRARAKAAKEAGIR--KITPHGLRHTFATLLLAGG-DERVIQKLLGHASLNTTQT  285 (309)
T ss_pred             ----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHH
T ss_conf             ----00653235653310367999999999973222788--8787740789999998568-7658999837870878999


Q ss_pred             HH-HCCHHHHHHHHHH
Q ss_conf             96-4599999999998
Q gi|255764498|r  273 YT-HLLPDKLQKLVQD  287 (300)
Q Consensus       273 Y~-~~~~~~~~~~~~~  287 (300)
T Consensus       286 ~~~~~~~~~~~~~~~~  301 (309)
T COG0582         286 VYYHASDERLKEAALK  301 (309)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9998710667899986