HHsearch alignment for GI: 255764498 and conserved domain: COG0582
>COG0582 XerC Integrase [DNA replication, recombination, and repair].
Probab=99.86 E-value=9.5e-21 Score=139.95 Aligned_cols=221 Identities=36% Similarity=0.498 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999999977998435322101123343210001222222122221-2122211122332024699998643200125
Q gi|255764498|r 41 HLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLE-LPKKNHILPKTLHKDTIANLLEQAKIEAENP 119 (300)
Q Consensus 41 ~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i~-~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~ 119 (300)
T Consensus 72 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---- 141 (309)
T COG0582 72 ELRGKLETALRE--STLTRVFRLAALRGFFAYLDNPG----APLKALREKPKRRKKLPKALTAEEVEALLEALDRY---- 141 (309)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH----
T ss_conf 888999999764--47779999999988888621631----04666531134454454548999999999998750----
Q ss_pred CCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6102776543110001221001343334320000011110001112---2211111000012478875323210012467
Q gi|255764498|r 120 APGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQG---KGNKERLVILSPSALHALQMYKKTCSSMKMT 196 (300)
Q Consensus 120 ~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~---K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~ 196 (300)
T Consensus 142 ----~~~~~~~~~~~---~tG~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 212 (309)
T COG0582 142 ----RDALRLALLIL---LTGLRVSELLGLRWSDIDLENGTIWIRGTKTKGRKERRVPLSEQALEALKKYLLIRRPRE-- 212 (309)
T ss_pred ----HHHHHHHHHHH---HHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCC--
T ss_conf ----57899999998---718779999827666505456727996135556651589605999999999998544433--
Q ss_pred CCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 7752001233322222----111111101234420146676425988588999999985888889999855899899899
Q gi|255764498|r 197 GNDLWLFPSSTKTGHL----SRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQI 272 (300)
Q Consensus 197 ~~~~~lf~~~~~~~~~----s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~ 272 (300)
T Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~lRht~~~~~~~~~-~~~~~~~~~gH~~~~~~~~ 285 (309)
T COG0582 213 ----YLFLSLRGPRLSRSALTINRLLRARAKAAKEAGIR--KITPHGLRHTFATLLLAGG-DERVIQKLLGHASLNTTQT 285 (309)
T ss_pred ----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHH
T ss_conf ----00653235653310367999999999973222788--8787740789999998568-7658999837870878999
Q ss_pred HH-HCCHHHHHHHHHH
Q ss_conf 96-4599999999998
Q gi|255764498|r 273 YT-HLLPDKLQKLVQD 287 (300)
Q Consensus 273 Y~-~~~~~~~~~~~~~ 287 (300)
T Consensus 286 ~~~~~~~~~~~~~~~~ 301 (309)
T COG0582 286 VYYHASDERLKEAALK 301 (309)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998710667899986