HHsearch alignment for GI: 255764498 and conserved domain: COG4342
>COG4342 Uncharacterized protein conserved in archaea [Function unknown].
Probab=98.31 E-value=1.3e-05 Score=51.93 Aligned_cols=220 Identities=19% Similarity=0.245 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC--CCCC-CCHHHHHHHHHH
Q ss_conf 999999999999997799843532210112334321000122222212222121-222111--2233-202469999864
Q gi|255764498|r 37 ASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELP-KKNHIL--PKTL-HKDTIANLLEQA 112 (300)
Q Consensus 37 i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i~~~-k~~~~~--~~~l-s~~e~~~ll~~~ 112 (300)
T Consensus 55 ~~~k~ardyls~l~r~ig~~~~kdKy~kA~R~f~~fl~~rgiise~~Ae~lrk~lk~k~~~g~dlyIp~de~ir~~~~l~ 134 (291)
T COG4342 55 LCGKTARDYLSALNRPIGSVREKDKYQKAYRLFIKFLTSRGIISEEFAEKLRKPLKVKKSNGVDLYIPSDEEIRATEELA 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHH
T ss_conf 65789999999988764431100579999999999998704133999999999864576788633249879998899999
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 32001256102776543110001221001343334320000011110001112221111100001247887532321001
Q gi|255764498|r 113 KIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKKTCSS 192 (300)
Q Consensus 113 ~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~ 192 (300)
T Consensus 135 r~~~----------e~~y~v~~ll~~SGaRLse~v~~L~~-~D~s~~~~~~ng~~--icyy~l~-----w~rg------- 189 (291)
T COG4342 135 REYS----------ERAYLVYLLLLFSGARLSEAVAVLRN-LDHSRLYCVVNGKV--ICYYPLS-----WSRG------- 189 (291)
T ss_pred HHHC----------CHHHHHHHHHHHCCCHHHHHHHHHHC-CCHHHHEEECCCEE--EEEECCC-----HHHC-------
T ss_conf 8854----------01899999998634309999999967-14312023128737--8850110-----3204-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCH-HHH
Q ss_conf 2467775200123332222211111-11012344201466764259885889999999858888899998558998-998
Q gi|255764498|r 193 MKMTGNDLWLFPSSTKTGHLSRQVF-ARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDI-STT 270 (300)
Q Consensus 193 ~~~~~~~~~lf~~~~~~~~~s~~~~-~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~-~tT 270 (300)
T Consensus 190 ---~K~afyif~P~~~~~~l~kidisy~~vq~~~~~~-----~Vk~kyiRkwv~nkmlelgvP~~VvdFIqGrk~~~V~~ 261 (291)
T COG4342 190 ---HKRAFYIFHPKDFAESLRKIDISYHRVQRFENRR-----GVKAKYIRKWVYNKMLELGVPEDVVDFIQGRKQSRVGT 261 (291)
T ss_pred ---CCCEEEEECCHHHHHHCHHCCCHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHH
T ss_conf ---5411568663665200110111299999998605-----82099999999999998099588999987467221578
Q ss_pred HHHHHCCHHHHHHHHHHHCC
Q ss_conf 99964599999999998280
Q gi|255764498|r 271 QIYTHLLPDKLQKLVQDYHP 290 (300)
Q Consensus 271 ~~Y~~~~~~~~~~~~~~~~p 290 (300)
T Consensus 262 rHY~nL~~-~Ake~Y~kyl~ 280 (291)
T COG4342 262 RHYANLLG-QAKEWYSKYLE 280 (291)
T ss_pred HHHHHHHH-HHHHHHHHHHH
T ss_conf 99999999-99999999999