HHsearch alignment for GI: 255764498 and conserved domain: COG4973
>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=392.45 Aligned_cols=283 Identities=34% Similarity=0.535 Sum_probs=260.4
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 96466413899999999999999999754499-86889999999999999977998435322101123343210001222
Q gi|255764498|r 1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEI-SLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLR 79 (300)
Q Consensus 1 ~l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~-~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~ 79 (300)
T Consensus 16 ~L~~Er~lS~hTl~~Y~rqL~~l~~~~~q~~~~~w~~ld~~~vr~~~a~~~~~Gl~a~SlA~rLSa~R~f~~wLv~~g~l 95 (299)
T COG4973 16 YLRVERQLSPHTLANYRRQLEALIALLAQMGLGSWQQLDPADVRAFVARSHRRGLSARSLARRLSALRSFYDWLVKQGEL 95 (299)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99986146888899999999999999997276566656999999999998318855778999999999999999872764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22212222121222111223320246999986432001256102776543110001221001343334320000011110
Q gi|255764498|r 80 KDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER 159 (300)
Q Consensus 80 ~~np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~ 159 (300)
T Consensus 96 ~~nPa~GvsaPK~~r~LPk~ld~d~~~~ll~---~d-----~~dPlavRDrAllElmY~sGLRLSELvgLd~~~vdl~~g 167 (299)
T COG4973 96 KANPAKGVSAPKQPRHLPKNLDVDEANRLLD---ID-----GDDPLAVRDRALLELMYGSGLRLSELVGLDLKHVDLDEG 167 (299)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC---CC-----CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC
T ss_conf 6686456889887443777689999999966---78-----999334789999999984370089884788444545542
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHH
Q ss_conf 00111222111110000124788753232100124677752001233322222111111101234420146676425988
Q gi|255764498|r 160 TMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHI 239 (300)
Q Consensus 160 ~i~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~ 239 (300)
T Consensus 168 eV~V~GKGnKeR~vP~g~~A~~al~~WL~lR~~~a~~--d~AlF~s-~~G~Ris~R~iQkR~~~wgikqg~~-~HvhPH~ 243 (299)
T COG4973 168 EVRVMGKGNKERRVPVGRKAVEALEHWLALRGLFASE--DDALFLS-RLGKRISARAIQKRLAQWGIKQGLN-SHVHPHK 243 (299)
T ss_pred EEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCCC--CCEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCC-CCCCHHH
T ss_conf 5899627873465352177999999998655103798--7605310-3688164889999999999860322-1387687
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCC
Q ss_conf 58899999998588888999985589989989996459999999999828011100
Q gi|255764498|r 240 IRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKE 295 (300)
Q Consensus 240 lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~ 295 (300)
T Consensus 244 LRHSFAtHmLesSgDLRaVQELLGHanlsTTQIYThLDFQHLA~vYD~AHPRAkrk 299 (299)
T COG4973 244 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRK 299 (299)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf 77788999987035489999985646512444323236899999986317411269