HHsearch alignment for GI: 255764498 and conserved domain: COG4973

>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=392.45  Aligned_cols=283  Identities=34%  Similarity=0.535  Sum_probs=260.4

Q ss_pred             CCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             96466413899999999999999999754499-86889999999999999977998435322101123343210001222
Q gi|255764498|r    1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEI-SLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLR   79 (300)
Q Consensus         1 ~l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~-~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~   79 (300)
T Consensus        16 ~L~~Er~lS~hTl~~Y~rqL~~l~~~~~q~~~~~w~~ld~~~vr~~~a~~~~~Gl~a~SlA~rLSa~R~f~~wLv~~g~l   95 (299)
T COG4973          16 YLRVERQLSPHTLANYRRQLEALIALLAQMGLGSWQQLDPADVRAFVARSHRRGLSARSLARRLSALRSFYDWLVKQGEL   95 (299)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99986146888899999999999999997276566656999999999998318855778999999999999999872764


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             22212222121222111223320246999986432001256102776543110001221001343334320000011110
Q gi|255764498|r   80 KDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER  159 (300)
Q Consensus        80 ~~np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~  159 (300)
T Consensus        96 ~~nPa~GvsaPK~~r~LPk~ld~d~~~~ll~---~d-----~~dPlavRDrAllElmY~sGLRLSELvgLd~~~vdl~~g  167 (299)
T COG4973          96 KANPAKGVSAPKQPRHLPKNLDVDEANRLLD---ID-----GDDPLAVRDRALLELMYGSGLRLSELVGLDLKHVDLDEG  167 (299)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC---CC-----CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC
T ss_conf             6686456889887443777689999999966---78-----999334789999999984370089884788444545542


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHH
Q ss_conf             00111222111110000124788753232100124677752001233322222111111101234420146676425988
Q gi|255764498|r  160 TMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHI  239 (300)
Q Consensus       160 ~i~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~  239 (300)
T Consensus       168 eV~V~GKGnKeR~vP~g~~A~~al~~WL~lR~~~a~~--d~AlF~s-~~G~Ris~R~iQkR~~~wgikqg~~-~HvhPH~  243 (299)
T COG4973         168 EVRVMGKGNKERRVPVGRKAVEALEHWLALRGLFASE--DDALFLS-RLGKRISARAIQKRLAQWGIKQGLN-SHVHPHK  243 (299)
T ss_pred             EEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCCC--CCEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCC-CCCCHHH
T ss_conf             5899627873465352177999999998655103798--7605310-3688164889999999999860322-1387687


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCC
Q ss_conf             58899999998588888999985589989989996459999999999828011100
Q gi|255764498|r  240 IRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKE  295 (300)
Q Consensus       240 lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~  295 (300)
T Consensus       244 LRHSFAtHmLesSgDLRaVQELLGHanlsTTQIYThLDFQHLA~vYD~AHPRAkrk  299 (299)
T COG4973         244 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRK  299 (299)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf             77788999987035489999985646512444323236899999986317411269