HHsearch alignment for GI: 255764498 and conserved domain: COG4974

>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=465.57  Aligned_cols=283  Identities=45%  Similarity=0.695  Sum_probs=264.5

Q ss_pred             CCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             96466413899999999999999999754499-86889999999999999977998435322101123343210001222
Q gi|255764498|r    1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEI-SLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLR   79 (300)
Q Consensus         1 ~l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~-~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~   79 (300)
T Consensus        15 ~l~~Er~ls~nTl~sYrrDL~~f~~~L~~~~~~~l~~~~~~di~~yl~~l~~~g~s~~S~aR~lsalR~fy~fl~~E~~~   94 (300)
T COG4974          15 YLWIERGLSANTLSSYRRDLEDFREWLEERGITDLADATEADIREYLTELAEQGLSATSIARALSALRSFYQFLIREGLR   94 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99997543264499999999999999876279884546899999999999857867224889999999999999977985


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             22212222121222111223320246999986432001256102776543110001221001343334320000011110
Q gi|255764498|r   80 KDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER  159 (300)
Q Consensus        80 ~~np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~  159 (300)
T Consensus        95 ~~dP~~~l~~PK~~~~LPk~Ls~~eve~Ll~~~~-------~~~p~~LRdrAmlELLYATGlRVSElv~L~l~dv~~~~~  167 (300)
T COG4974          95 EDDPTRLLDSPKLPKRLPKFLSEEEVEALLEAPD-------EDTPLGLRDRAMLELLYATGLRVSELVGLTLSDVDLRQG  167 (300)
T ss_pred             CCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCCC
T ss_conf             3382444247877776776259999999981888-------898075799999999998277599985675765132468


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCH
Q ss_conf             001112221111100001247887532321001246777--520012333222221111111012344201466764259
Q gi|255764498|r  160 TMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGN--DLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISP  237 (300)
Q Consensus       160 ~i~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~--~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~  237 (300)
T Consensus       168 ~v~V~GKG~KeR~VP~g~~A~~~l~~Yl~~~R~~l~~~~~~~~~LF~n~~-g~~ltrq~~w~~lk~~a~~Agi~-~~isP  245 (300)
T COG4974         168 VVRVRGKGNKERLVPFGEEAVEALEKYLEEARPKLLKGKSSTDALFPNQR-GGGLTRQGFWKRLKDYAERAGID-KKISP  245 (300)
T ss_pred             EEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-CCCCCHHHHHHHHHHHHHHHCCC-CCCCC
T ss_conf             68997158825552133999999999999865988425788985645489-99877999999999999981888-78681


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf             8858899999998588888999985589989989996459999999999828011
Q gi|255764498|r  238 HIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLA  292 (300)
Q Consensus       238 H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~  292 (300)
T Consensus       246 H~LRHsFATHLL~~GADlRvVQeLLGHadisTTQIYTHV~~e~L~~~~~~~HPra  300 (300)
T COG4974         246 HTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHVTKERLRDLYAQHHPRA  300 (300)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             3657889999986785399999984866501557879988999999999738999