HHsearch alignment for GI: 255764498 and conserved domain: COG4974
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=465.57 Aligned_cols=283 Identities=45% Similarity=0.695 Sum_probs=264.5
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 96466413899999999999999999754499-86889999999999999977998435322101123343210001222
Q gi|255764498|r 1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEI-SLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLR 79 (300)
Q Consensus 1 ~l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~-~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~ 79 (300)
T Consensus 15 ~l~~Er~ls~nTl~sYrrDL~~f~~~L~~~~~~~l~~~~~~di~~yl~~l~~~g~s~~S~aR~lsalR~fy~fl~~E~~~ 94 (300)
T COG4974 15 YLWIERGLSANTLSSYRRDLEDFREWLEERGITDLADATEADIREYLTELAEQGLSATSIARALSALRSFYQFLIREGLR 94 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99997543264499999999999999876279884546899999999999857867224889999999999999977985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22212222121222111223320246999986432001256102776543110001221001343334320000011110
Q gi|255764498|r 80 KDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER 159 (300)
Q Consensus 80 ~~np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~ 159 (300)
T Consensus 95 ~~dP~~~l~~PK~~~~LPk~Ls~~eve~Ll~~~~-------~~~p~~LRdrAmlELLYATGlRVSElv~L~l~dv~~~~~ 167 (300)
T COG4974 95 EDDPTRLLDSPKLPKRLPKFLSEEEVEALLEAPD-------EDTPLGLRDRAMLELLYATGLRVSELVGLTLSDVDLRQG 167 (300)
T ss_pred CCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCCC
T ss_conf 3382444247877776776259999999981888-------898075799999999998277599985675765132468
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCH
Q ss_conf 001112221111100001247887532321001246777--520012333222221111111012344201466764259
Q gi|255764498|r 160 TMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGN--DLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISP 237 (300)
Q Consensus 160 ~i~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~--~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~ 237 (300)
T Consensus 168 ~v~V~GKG~KeR~VP~g~~A~~~l~~Yl~~~R~~l~~~~~~~~~LF~n~~-g~~ltrq~~w~~lk~~a~~Agi~-~~isP 245 (300)
T COG4974 168 VVRVRGKGNKERLVPFGEEAVEALEKYLEEARPKLLKGKSSTDALFPNQR-GGGLTRQGFWKRLKDYAERAGID-KKISP 245 (300)
T ss_pred EEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-CCCCCHHHHHHHHHHHHHHHCCC-CCCCC
T ss_conf 68997158825552133999999999999865988425788985645489-99877999999999999981888-78681
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf 8858899999998588888999985589989989996459999999999828011
Q gi|255764498|r 238 HIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLA 292 (300)
Q Consensus 238 H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~ 292 (300)
T Consensus 246 H~LRHsFATHLL~~GADlRvVQeLLGHadisTTQIYTHV~~e~L~~~~~~~HPra 300 (300)
T COG4974 246 HTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHVTKERLRDLYAQHHPRA 300 (300)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 3657889999986785399999984866501557879988999999999738999