HHsearch alignment for GI: 255764498 and conserved domain: PRK00236
>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed.
Probab=100.00 E-value=0 Score=432.19 Aligned_cols=278 Identities=40% Similarity=0.607 Sum_probs=254.6
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6466413899999999999999999754499-868899999999999999779984353221011233432100012222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEI-SLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRK 80 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~-~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~ 80 (300)
T Consensus 17 l~~~r~lS~~Ti~~Y~~~l~~f~~~~~~~~~~~l~~i~~~~i~~~~~~l~~~g~s~~Ti~~~l~~lr~~~~~a~~~~~i~ 96 (295)
T PRK00236 17 LRVERGLSPHTLRAYRRDLRAFLAFLEEVGLADLQQLDLADLRAFLARLRRQGLSARSLARRLSALRSFYRWLVRRGLLK 96 (295)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99885907999999999999999999875999947699999999999998769999999999999999999887628614
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 22122221212221112233202469999864320012561027765431100012210013433343200000111100
Q gi|255764498|r 81 DNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERT 160 (300)
Q Consensus 81 ~np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~ 160 (300)
T Consensus 97 ~nP~~~i~~~k~~~~~~~~lt~~e~~~ll~~~~~--------~~~~~Rd~~i~~ll~~tGlR~~E~~~L~~~did~~~~~ 168 (295)
T PRK00236 97 ANPAAGLRAPKAPKRLPKPLDVDQAKRLLDADAD--------DPLALRDRAILELLYGSGLRLSELVGLDIDDLDLASGT 168 (295)
T ss_pred CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCCCCCE
T ss_conf 5778751277766568850018999999971325--------80658999999999981978331205639772777898
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 01112221111100001247887532321001246777520012333222221111111012344201466764259885
Q gi|255764498|r 161 MIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII 240 (300)
Q Consensus 161 i~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~l 240 (300)
T Consensus 169 i~i~~Kg~K~R~Vpl~~~~~~~L~~yl~~~~~---~~~~~~lF~~~-~g~~l~~~~i~~~~~~~~~~~gi~~-~~~~H~l 243 (295)
T PRK00236 169 VRVLGKGNKERTVPVGSAALEALEAYLARPLA---EEDDDALFLGA-RGGRLSPRVVQRRVKKLRKKAGLPE-HITPHKL 243 (295)
T ss_pred EEEECCCCEEEEEECCHHHHHHHHHHHHHCCC---CCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCC
T ss_conf 98817898168986599999999999996776---78998377568-9995878899999999999859999-9989978
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf 8899999998588888999985589989989996459999999999828011
Q gi|255764498|r 241 RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLA 292 (300)
Q Consensus 241 Rht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~ 292 (300)
T Consensus 244 RHt~At~l~~~G~~l~~vq~~LGHssi~tT~~Y~h~~~~~l~~~~~~~~p~~ 295 (295)
T PRK00236 244 RHSFATHLLESGGDLRAVQELLGHASLSTTQIYTHVDFQHLAEVYDAAHPRA 295 (295)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 8999999998799999999881899889999988689999999999878399