HHsearch alignment for GI: 255764498 and conserved domain: PRK00283
>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed.
Probab=100.00 E-value=0 Score=442.04 Aligned_cols=283 Identities=43% Similarity=0.670 Sum_probs=261.2
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD 81 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~ 81 (300)
T Consensus 13 L~~erg~S~~Ti~~Y~~~l~~f~~~l~~~~~~~~~it~~~i~~y~~~L~~~~~s~~Tin~~l~~lr~~~~~a~~~~~i~~ 92 (296)
T PRK00283 13 LWVERGLAENTLSSYRRDLELFAEWLAARGLSLAEATRDDLQAFLAELAEGGYKATSSARRLSALRRFFQFLLREGLRED 92 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99987907999999999999999999875999477999999999999987799999999999999974799987074334
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 21222212122211122332024699998643200125610277654311000122100134333432000001111000
Q gi|255764498|r 82 NPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTM 161 (300)
Q Consensus 82 np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i 161 (300)
T Consensus 93 np~~~i~~~k~~~~~~~~lt~eei~~ll~~~~~-------~~~~~~Rd~ail~ll~~tGlR~~El~~L~~~di~~~~~~i 165 (296)
T PRK00283 93 DPTALLDSPKLPRRLPKTLSEAQVEALLDAPDI-------DTPLGLRDRAMLELLYATGLRVSELVGLTLDDVSLRQGVV 165 (296)
T ss_pred CHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCCCCCCE
T ss_conf 878636677888889741437899998732377-------8657689999999999838761202178599923577955
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 111222111110000124788753232100124-6777520012333222221111111012344201466764259885
Q gi|255764498|r 162 IIQGKGNKERLVILSPSALHALQMYKKTCSSMK-MTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII 240 (300)
Q Consensus 162 ~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~-~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~l 240 (300)
T Consensus 166 ~v~~Kg~K~R~vpl~~~~~~~l~~yl~~~r~~~~~~~~~~~lF~~~-~g~~l~~~~~~~~~~~~~~~agi~~~~~tpH~l 244 (296)
T PRK00283 166 RVTGKGNKERLVPLGEEAVYAIERYLERGRPALLGGRSSDALFPSA-RGGQLTRQTFWHRIKHYAKRAGIDPKKLSPHVL 244 (296)
T ss_pred EEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7717898036997088999999999998657751489997475428-898467999999999999980899998899878
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf 8899999998588888999985589989989996459999999999828011
Q gi|255764498|r 241 RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLA 292 (300)
Q Consensus 241 Rht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~ 292 (300)
T Consensus 245 RHt~at~ll~~G~~l~~i~~~LGHssi~TT~~Y~h~~~~~l~~~~~~~~p~~ 296 (296)
T PRK00283 245 RHAFATHLLNHGADLRVVQELLGHSDISTTQIYTHVATERLKELHAQHHPRA 296 (296)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 7999999998798999999882899889999988689999999999868499