HHsearch alignment for GI: 255764498 and conserved domain: PRK05084
>PRK05084 xerS site-specific tyrosine recombinase XerS; Reviewed.
Probab=100.00 E-value=0 Score=389.87 Aligned_cols=281 Identities=25% Similarity=0.380 Sum_probs=234.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCC------------CHHHCCHHHHHHHHHHHHH----------CCCCHHHHHHH
Q ss_conf 6413899999999999999999754499------------8688999999999999997----------79984353221
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEI------------SLSAASTNHLISYLNHLSQ----------RKLVTSSQRRK 62 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~------------~~~~i~~~~i~~~~~~l~~----------~~~s~~T~~~~ 62 (300)
T Consensus 30 ~~~~Sp~Ti~~Y~~DL~~F~~fL~~~~~~~~~~~~~i~~~~l~~l~~~di~~y~~~L~~~~~~~~~~~~~~~s~~tinRk 109 (360)
T PRK05084 30 ATPYSPTTLYEYLTEYRRFFNWLIDEGLTVATKIKDIPLSTLENLTKKDVELFILYLRERPSLNGHLTGEGVSQTTINRT 109 (360)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 05989899999999999999999864987555633277899975669999999999985222343212257678899999
Q ss_pred HHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCCC--------CCCCCCCHHHHHHHHHHHHHCCCCCCHH----
Q ss_conf 011233432100012-------222221222212122211--------1223320246999986432001256102----
Q gi|255764498|r 63 ISVIRQFYNFLCYEG-------LRKDNPSDTLELPKKNHI--------LPKTLHKDTIANLLEQAKIEAENPAPGQ---- 123 (300)
Q Consensus 63 ~~~l~~~~~~~~~~~-------~~~~np~~~i~~~k~~~~--------~~~~ls~~e~~~ll~~~~~~~~~~~~~~---- 123 (300)
T Consensus 110 lsaLrsFfkyL~~~~~~~~~~~y~~~n~~~~i~~~k~~~~~~~r~~~~~~~~l~~~e~~~ll~~i~~~~~~~l~~~~~~~ 189 (360)
T PRK05084 110 LSALKSLFKYLTEETENEDGEPYFYRNVMKKISLKKKKETLAARAENLKQKLFLGDETVEFLDFIDNEYEQKLSNRALSS 189 (360)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999985202232213311526525777653212231000012005567899999765244341202555443
Q ss_pred --HHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCC
Q ss_conf --7765431100012210013433343200000111100011122211111000012478875323210012-4677752
Q gi|255764498|r 124 --WKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKKTCSSM-KMTGNDL 200 (300)
Q Consensus 124 --~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~-~~~~~~~ 200 (300)
T Consensus 190 ~~~~~~RD~aIi~ll~~tGlRvsEl~~L~~~DId~~~~~i~V~~Kg~K~r~vpi~~~~~~~l~~yl~~r~~~~~~~~~~~ 269 (360)
T PRK05084 190 FKKNKERDLAIIALLLGSGIRVSELVNLDLKDLNLKQMTIDVTRKGGKRDSVPIAPFALPYLEEYLKIRAQRYKAEKNDT 269 (360)
T ss_pred HCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 01236799999999998587999997697998587899799984798446887789999999999997087435778888
Q ss_pred CCCCCCCC--CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCH
Q ss_conf 00123332--2222111111101234420146676425988588999999985888889999855899899899964599
Q gi|255764498|r 201 WLFPSSTK--TGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLP 278 (300)
Q Consensus 201 ~lf~~~~~--~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~ 278 (300)
T Consensus 270 ~lF~~~~~~~~~rls~~~i~~~v~k~~~~~~~---~itpH~LRHtfAT~Ll~~G~dl~~vq~lLGH~si~TT~iYthv~~ 346 (360)
T PRK05084 270 ALFLTKYRGKPNRISASAIEKMVAKYSEAFGV---RVTPHKLRHTLATRLYDATKDQVLVADQLGHTSTQVTDLYTHIVN 346 (360)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf 15764689988822499999999999986799---978413299999999987999999999858998799999886899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999982
Q gi|255764498|r 279 DKLQKLVQDY 288 (300)
Q Consensus 279 ~~~~~~~~~~ 288 (300)
T Consensus 347 ~~~r~a~~~l 356 (360)
T PRK05084 347 DEQKDALDKL 356 (360)
T ss_pred HHHHHHHHHH
T ss_conf 9999999863