>TIGR02249 integrase_gron integron integrase; InterPro: IPR011946 Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family that also includes recombinases XerC (IPR011931 from INTERPRO) and XerD (IPR011932 from INTERPRO), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration.

Probab=100.00 E-value=0 Score=340.25 Aligned_cols=256 Identities=31% Similarity=0.479 Sum_probs=212.5 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHC-CCCHHHCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 4138999999999999999997544-998688999999999999997-79984353221011233432100012222221 Q gi|255764498|r 6 RASSINTLSAYKRDLKEMQNFLNNK-EISLSAASTNHLISYLNHLSQ-RKLVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300) Q Consensus 6 R~~S~~T~~~Y~~~l~~f~~~~~~~-~~~~~~i~~~~i~~~~~~l~~-~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300) T Consensus 12 ~hYs~~T~~aY~~Wi~rfI~frG~~C~~hp~~~g~~eVeaFLs~LAv~~~Vs~sTQ~QAL~ALlFLY~~iL~~~L~~--- 88 (320) T TIGR02249 12 RHYSKRTEEAYLHWIKRFIRFRGHNCLRHPSTLGDTEVEAFLSDLAVDGKVSASTQNQALAALLFLYKEILKLELSL--- 88 (320) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC--- T ss_conf 88789999999999999998850510138533075678888567764257476579999999999999984688874--- Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCC Q ss_conf 222212122211122332024699998643-2001256102776543110001221001343334320000011110001 Q gi|255764498|r 84 SDTLELPKKNHILPKTLHKDTIANLLEQAK-IEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMI 162 (300) Q Consensus 84 ~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~-~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~ 162 (300) T Consensus 89 ~~~~~Ra~~~~kLPvVLT~eEV~~~l~~l~eg~-------------y~L~a~LLYGsGMRlmE~LRLRikDiDF~~~~I~ 155 (320) T TIGR02249 89 MENFVRAKRPRKLPVVLTREEVARLLEHLEEGK-------------YRLIAKLLYGSGMRLMECLRLRIKDIDFDYGEIR 155 (320) T ss_pred HHHCCCCCCCCCCCEECCHHHHHHHHHHCCCCC-------------HHHHHHHHCCCHHHHHHHHHCCCCEEEECCCEEE T ss_conf 222206788873773359889999984257861-------------3112223125515898887510110343376689 Q ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--------------------------CCCCCCCCCCCCCC------- Q ss_conf 1-1222111110000124788753232100124--------------------------67775200123332------- Q gi|255764498|r 163 I-QGKGNKERLVILSPSALHALQMYKKTCSSMK--------------------------MTGNDLWLFPSSTK------- 208 (300) Q Consensus 163 v-~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~--------------------------~~~~~~~lf~~~~~------- 208 (300) T Consensus 156 vr~GKG~KdR~v~Lp~~L~~~L~~q~~~~~~~h~~Dl~~~G~g~V~LP~AL~rKYPnA~~~~~WqylFPs~~~S~DPrsG 235 (320) T TIGR02249 156 VRDGKGGKDRVVTLPKSLAPPLREQLERARALHEKDLLAEGYGGVYLPHALARKYPNASKEWGWQYLFPSARLSRDPRSG 235 (320) T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCC T ss_conf 97366898861268175579999999999999998640588530100455421578735667876653775015577778 Q ss_pred ---CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCH Q ss_conf ---2222111111101234420146676425988588999999985888889999855899899899964599 Q gi|255764498|r 209 ---TGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLP 278 (300) Q Consensus 209 ---~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~ 278 (300) T Consensus 236 ~~~RHH~~e~~~QRav~~Av~~AGI~K-pvTcHTLRHSFATHLLe~G~DIRTVQelLGHsDVkTTqIYTHVL~ 307 (320) T TIGR02249 236 RIRRHHIDEKTIQRAVRRAVERAGIEK-PVTCHTLRHSFATHLLESGADIRTVQELLGHSDVKTTQIYTHVLN 307 (320) T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEC T ss_conf 520010670043289999999578988-678874212244305651773678988617884224634530514

HHsearch alignment for GI: 255764498 and conserved domain: TIGR02249