HHsearch alignment for GI: 255764498 and conserved domain: cd00798
>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen
Probab=100.00 E-value=0 Score=404.05 Aligned_cols=276 Identities=41% Similarity=0.614 Sum_probs=250.5
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHCC-CCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9646641389999999999999999975449-986889999999999999977998435322101123343210001222
Q gi|255764498|r 1 MMSSERASSINTLSAYKRDLKEMQNFLNNKE-ISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLR 79 (300)
Q Consensus 1 ~l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~-~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~ 79 (300)
T Consensus 7 ~l~~~r~lS~~T~~~Y~~~l~~f~~~~~~~~~~~~~~i~~~~i~~~~~~L~~~~~s~~Ti~~~~~~l~~~~~~~~~~~~i 86 (284)
T cd00798 7 YLAVERGLSENTLAAYRRDLERFLEFLEERGILFPADVTPDDIRRFLAELKDQGLSARSIARKLSALRSFFKFLLREGLI 86 (284)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998590799999999999999999998299994879999999999999876999999999999999999999865876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22212222121222111223320246999986432001256102776543110001221001343334320000011110
Q gi|255764498|r 80 KDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER 159 (300)
Q Consensus 80 ~~np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~ 159 (300)
T Consensus 87 ~~np~~~i~~~k~~~~~~~~l~~~ei~~ll~~~~~-------~~~~~~Rd~~i~~ll~~tGlR~~E~~~L~~~did~~~~ 159 (284)
T cd00798 87 LANPAELIEPPKLKRSLPKVLTIEEVERLLAAPDG-------DTPLGLRDRALLELLYSTGLRVSELVGLKLSDVDLSRG 159 (284)
T ss_pred CCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCC
T ss_conf 56823202578868778886799998999986323-------77677999999999999679924461696999476677
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHH
Q ss_conf 00111222111110000124788753232100124-67775200123332222211111110123442014667642598
Q gi|255764498|r 160 TMIIQGKGNKERLVILSPSALHALQMYKKTCSSMK-MTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPH 238 (300)
Q Consensus 160 ~i~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~-~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H 238 (300)
T Consensus 160 ~i~v~~K~~k~r~vpl~~~~~~~l~~~~~~~~~~~~~~~~~~~lF~~~-~g~~~~~~~~~~~~~~~~~~~g~~~-~~~~H 237 (284)
T cd00798 160 LIRVRGKGNKERIVPLGETAVEALQRYLEVRRPLLLKVGDSDALFLNQ-RGKRLSRRGVWKILKEYARRAGIEK-KISPH 237 (284)
T ss_pred EEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC-CCCCCCHHHHHHHHHHHHHHHCCCC-CCCCH
T ss_conf 799964799447886499999999999998334203678776332236-8982657999999999999909999-99914
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 85889999999858888899998558998998999645999999999
Q gi|255764498|r 239 IIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLV 285 (300)
Q Consensus 239 ~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~ 285 (300)
T Consensus 238 ~lRHt~at~l~~~g~~~~~i~~~lGH~s~~tT~~Y~h~~~~~l~e~~ 284 (284)
T cd00798 238 TLRHSFATHLLENGADLRAVQELLGHASLATTQIYTHVSFEHLKEVY 284 (284)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 65999999999878999999988079879999987777999998519