HHsearch alignment for GI: 255764498 and conserved domain: cd00799
>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.
Probab=100.00 E-value=0 Score=301.66 Aligned_cols=258 Identities=21% Similarity=0.210 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-C
Q ss_conf 999999999999999997544998688999999999999997799843532210112334321000122222212222-1
Q gi|255764498|r 10 INTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTL-E 88 (300)
Q Consensus 10 ~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i-~ 88 (300)
T Consensus 1 enT~~aY~~~l~~f~~wc~~~~~~~~~~t~~~v~~yl~~L~~-~~~~~Ti~~~lsalr~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
T cd00799 1 DNTRKAYLSDWRRFAAWCQAHGRTPLPASPETVTLYLTDLAD-SLAPSTISRRLSALSQLHRRSGLPSPADSPLVRLVLR 79 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 905999999999999999974999788999999999999984-7787699999999999999970588654714888753
Q ss_pred C---C-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH---CC
Q ss_conf 2---1-222111223320246999986432001256102776543110001221001343334320000011110---00
Q gi|255764498|r 89 L---P-KKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER---TM 161 (300)
Q Consensus 89 ~---~-k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~---~i 161 (300)
T Consensus 80 ~~~r~~~~~~~~~~~~~~~~l~~ll~~~~~------~~~~~~~Rd~ail~ll~~tGlR~~El~~L~~~di~~~~~~~~~i 153 (287)
T cd00799 80 GIRREEARPKRQALAILPEDLDKLRSLLDE------SDTLRDLRDLALLLLGFAGLLRRSELVRLRWEDLTFTDGGGLLV 153 (287)
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEE
T ss_conf 211236887657898999999999862555------78758799999999999862389999718398718578971799
Q ss_pred CC-CCCCCCC------CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 11-1222111------110000124788753232100124677752001233-----32222211111110123442014
Q gi|255764498|r 162 II-QGKGNKE------RLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSS-----TKTGHLSRQVFARDLKALAARAG 229 (300)
Q Consensus 162 ~v-~~K~~k~------R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~-----~~~~~~s~~~~~~~~~~~~~~~g 229 (300)
T Consensus 154 ~~~~~K~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~lF~~~~~~~~~~~~~ls~~~v~~~~~~~~~~ag 228 (287)
T cd00799 154 TLRRSKTDQSGLGVLKLIPPLTTCPVRALERWLEAARI-----PKGPLFRRIDRWGVLGPGALSDNSLNRILKRLAEAAG 228 (287)
T ss_pred EECCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 95587403548783675062158999999999987256-----7664302444467757887878999999999999859
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHH
Q ss_conf 66764259885889999999858888899998558998998999645999
Q gi|255764498|r 230 IQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPD 279 (300)
Q Consensus 230 i~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~ 279 (300)
T Consensus 229 ~~~~~~s~H~lRHt~At~ll~~G~~l~~Iq~~lGH~s~~tt~~Y~~~~d~ 278 (287)
T cd00799 229 LRSGSWSGHSLRRGFATEAARAGYSLLEIMRQGRWRSPKMVSRYIRDADR 278 (287)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCH
T ss_conf 99999897513899999999879999999998589998899998537131