HHsearch alignment for GI: 255764498 and conserved domain: cd01185
>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.
Probab=100.00 E-value=0 Score=353.35 Aligned_cols=260 Identities=24% Similarity=0.345 Sum_probs=220.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHH----CCCCHHHCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6413899999999999999999754----499868899999999999999-77998435322101123343210001222
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNN----KEISLSAASTNHLISYLNHLS-QRKLVTSSQRRKISVIRQFYNFLCYEGLR 79 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~----~~~~~~~i~~~~i~~~~~~l~-~~~~s~~T~~~~~~~l~~~~~~~~~~~~~ 79 (300)
T Consensus 30 ~k~~S~~Ti~~Y~~~l~~f~~Fl~~~~~~~di~~~~i~~~~i~~f~~~L~~~k~~s~~Ti~~~l~~lr~~~~~a~~~~~i 109 (299)
T cd01185 30 GKDKAQSTWKRYRTHLKNLREFIECTYKEIDIALLELTREFILEFKLFLRKEKKLSRNTAVHYLSWLKKLLKIAYRDKGL 109 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77567999999999999999999982887778878847999999999998757988889999999999999999988992
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22212222121222111223320246999986432001256102776543110001221001343334320000011110
Q gi|255764498|r 80 KDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER 159 (300)
Q Consensus 80 ~~np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~ 159 (300)
T Consensus 110 ~~nP~~~i~~~k~~~~~~~~Lt~eEi~~ll~~~~~------~~~~~~~r~~~l~--~~~TGlR~~El~~L~~~dI~~~~~ 181 (299)
T cd01185 110 RDNPFAKFKCKKEEETDREYLTPDELQKLAETPCK------DPRLELVRRAFLF--SCFTGLRYSDIKKLTWEEIVEDSD 181 (299)
T ss_pred CCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC------CCCHHHHHHHHHH--HHHHCCCHHHHHHCCHHHHHHCCC
T ss_conf 11929656178889989999999999999827147------8746999999999--988098899998396998213369
Q ss_pred C---CCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 0---011-122211111000012478875323210012467775200123332222211111110123442014667642
Q gi|255764498|r 160 T---MII-QGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNI 235 (300)
Q Consensus 160 ~---i~v-~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~ 235 (300)
T Consensus 182 ~~~~i~~~~~Kt~~~~~ipl~~~~~~~l~~~~~--------~~~~~lF~~~------~~~~~~~~lk~~~~~agi~~-~i 246 (299)
T cd01185 182 GEKWIRKRRQKTKVEVYIPLLDEALQILGKYPD--------EKEGLVFPLL------KNSNMNKPLKEWAKLAGIKK-HI 246 (299)
T ss_pred CEEEEEECCCCCCEEEEEECHHHHHHHHHHHHC--------CCCCCCCCCC------CHHHHHHHHHHHHHHHCCCC-CC
T ss_conf 648998516744224320015999999998522--------6754406888------75689999999999828899-99
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 5988588999999985888889999855899899899964599999999998
Q gi|255764498|r 236 SPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQD 287 (300)
Q Consensus 236 t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~ 287 (300)
T Consensus 247 t~H~lRHTfAt~ll~~G~~l~~vq~~LGHssi~tT~~Y~hv~~e~~~e~~~k 298 (299)
T cd01185 247 TFHCARHTFATLQLLSGGPIETVSKMLGHTNIKTTQVYARVTDEKKSEDMNK 298 (299)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 8114099999999987989999998818998899999987798899999963