HHsearch alignment for GI: 255764498 and conserved domain: cd01185

>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.
Probab=100.00  E-value=0  Score=353.35  Aligned_cols=260  Identities=24%  Similarity=0.345  Sum_probs=220.7

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHH----CCCCHHHCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             6413899999999999999999754----499868899999999999999-77998435322101123343210001222
Q gi|255764498|r    5 ERASSINTLSAYKRDLKEMQNFLNN----KEISLSAASTNHLISYLNHLS-QRKLVTSSQRRKISVIRQFYNFLCYEGLR   79 (300)
Q Consensus         5 ~R~~S~~T~~~Y~~~l~~f~~~~~~----~~~~~~~i~~~~i~~~~~~l~-~~~~s~~T~~~~~~~l~~~~~~~~~~~~~   79 (300)
T Consensus        30 ~k~~S~~Ti~~Y~~~l~~f~~Fl~~~~~~~di~~~~i~~~~i~~f~~~L~~~k~~s~~Ti~~~l~~lr~~~~~a~~~~~i  109 (299)
T cd01185          30 GKDKAQSTWKRYRTHLKNLREFIECTYKEIDIALLELTREFILEFKLFLRKEKKLSRNTAVHYLSWLKKLLKIAYRDKGL  109 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             77567999999999999999999982887778878847999999999998757988889999999999999999988992


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             22212222121222111223320246999986432001256102776543110001221001343334320000011110
Q gi|255764498|r   80 KDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER  159 (300)
Q Consensus        80 ~~np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~  159 (300)
T Consensus       110 ~~nP~~~i~~~k~~~~~~~~Lt~eEi~~ll~~~~~------~~~~~~~r~~~l~--~~~TGlR~~El~~L~~~dI~~~~~  181 (299)
T cd01185         110 RDNPFAKFKCKKEEETDREYLTPDELQKLAETPCK------DPRLELVRRAFLF--SCFTGLRYSDIKKLTWEEIVEDSD  181 (299)
T ss_pred             CCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC------CCCHHHHHHHHHH--HHHHCCCHHHHHHCCHHHHHHCCC
T ss_conf             11929656178889989999999999999827147------8746999999999--988098899998396998213369


Q ss_pred             C---CCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf             0---011-122211111000012478875323210012467775200123332222211111110123442014667642
Q gi|255764498|r  160 T---MII-QGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNI  235 (300)
Q Consensus       160 ~---i~v-~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~  235 (300)
T Consensus       182 ~~~~i~~~~~Kt~~~~~ipl~~~~~~~l~~~~~--------~~~~~lF~~~------~~~~~~~~lk~~~~~agi~~-~i  246 (299)
T cd01185         182 GEKWIRKRRQKTKVEVYIPLLDEALQILGKYPD--------EKEGLVFPLL------KNSNMNKPLKEWAKLAGIKK-HI  246 (299)
T ss_pred             CEEEEEECCCCCCEEEEEECHHHHHHHHHHHHC--------CCCCCCCCCC------CHHHHHHHHHHHHHHHCCCC-CC
T ss_conf             648998516744224320015999999998522--------6754406888------75689999999999828899-99


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             5988588999999985888889999855899899899964599999999998
Q gi|255764498|r  236 SPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQD  287 (300)
Q Consensus       236 t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~  287 (300)
T Consensus       247 t~H~lRHTfAt~ll~~G~~l~~vq~~LGHssi~tT~~Y~hv~~e~~~e~~~k  298 (299)
T cd01185         247 TFHCARHTFATLQLLSGGPIETVSKMLGHTNIKTTQVYARVTDEKKSEDMNK  298 (299)
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf             8114099999999987989999998818998899999987798899999963