HHsearch alignment for GI: 255764498 and conserved domain: cd01185

>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.
Probab=90.51  E-value=0.26  Score=26.91  Aligned_cols=27  Identities=11%  Similarity=0.164  Sum_probs=22.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             779984353221011233432100012
Q gi|255764498|r   51 QRKLVTSSQRRKISVIRQFYNFLCYEG   77 (300)
Q Consensus        51 ~~~~s~~T~~~~~~~l~~~~~~~~~~~   77 (300)
T Consensus        30 ~k~~S~~Ti~~Y~~~l~~f~~Fl~~~~   56 (299)
T cd01185          30 GKDKAQSTWKRYRTHLKNLREFIECTY   56 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             775679999999999999999999828