HHsearch alignment for GI: 255764498 and conserved domain: cd01185
>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.
Probab=90.51 E-value=0.26 Score=26.91 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=22.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 779984353221011233432100012
Q gi|255764498|r 51 QRKLVTSSQRRKISVIRQFYNFLCYEG 77 (300)
Q Consensus 51 ~~~~s~~T~~~~~~~l~~~~~~~~~~~ 77 (300)
T Consensus 30 ~k~~S~~Ti~~Y~~~l~~f~~Fl~~~~ 56 (299)
T cd01185 30 GKDKAQSTWKRYRTHLKNLREFIECTY 56 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 775679999999999999999999828