HHsearch alignment for GI: 255764498 and conserved domain: cd01195
>cd01195 INT_Tn544B_C Tn544B and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes various bacterial transposases similar to TnpB from transposon Tn554.
Probab=100.00 E-value=6.4e-37 Score=233.98 Aligned_cols=178 Identities=22% Similarity=0.344 Sum_probs=139.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHC------CCC-CCCCCCC
Q ss_conf 233202469999864320012561027765431100012210013433343200000111100------011-1222111
Q gi|255764498|r 98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERT------MII-QGKGNKE 170 (300)
Q Consensus 98 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~------i~v-~~K~~k~ 170 (300)
T Consensus 1 ~~i~~~~~~~l~~~l~~l~~----------~~~~~~~ll~~TGlRisE~l~L~~~~i~~~~~~~~~~~~~~~~~k~~~k~ 70 (195)
T cd01195 1 RFIPEFVLEQLNSHIDKLPE----------YIIPMTMIVQETGMRISDLLTLKKNCLLEDKDGDFFYKYYQCIWKTKIKE 70 (195)
T ss_pred CCCCHHHHHHHHHHHHHCCH----------HHHHHHHHHHHCCCHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCCEE
T ss_conf 98998999999999986899----------89999999998087399996386114555036555267999967988743
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCC---CCCCCCCCCCCCCCHHHHHHHCCCCCC-----CCCHHHH
Q ss_conf 11000012478875323210012--4677752001233---322222111111101234420146676-----4259885
Q gi|255764498|r 171 RLVILSPSALHALQMYKKTCSSM--KMTGNDLWLFPSS---TKTGHLSRQVFARDLKALAARAGIQKK-----NISPHII 240 (300)
Q Consensus 171 R~ipi~~~~~~~l~~y~~~~~~~--~~~~~~~~lf~~~---~~~~~~s~~~~~~~~~~~~~~~gi~~~-----~~t~H~l 240 (300)
T Consensus 71 r~ipi~~~~~~~l~~~~~~~~~~~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~H~l 150 (195)
T cd01195 71 HIIPISKKVALLIKVREDKTKELSTEDNNPSEYLFPRYDGKPKGQPTNKQAFRGELNKLAYEKNIVDKSGEIYHFHAHAF 150 (195)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 68867899999999999998987302069885487678898088876199999999999998186533477256688877
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 889999999858888899998558998998999645999999999
Q gi|255764498|r 241 RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLV 285 (300)
Q Consensus 241 Rht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~ 285 (300)
T Consensus 151 RHT~aT~L~~~Gv~i~~Iq~~LGH~s~~tT~~Yahv~~e~l~~~~ 195 (195)
T cd01195 151 RHTVATRMINNGMPIHIIQKFLGHESPEMTSRYAHIFDETLKNEF 195 (195)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 489999999869999999999489998999998857989998629