HHsearch alignment for GI: 255764498 and conserved domain: cd01196
>cd01196 INT_VanD VanD integrase, IntD, and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases including those similar to IntD, a putative integrase-like protein, a component of the vanD glycopeptide resistance cluster in Enterococcus faecium BM4339. Members of this CD are predominantly bacterial in origin.
Probab=100.00 E-value=0 Score=357.21 Aligned_cols=256 Identities=23% Similarity=0.338 Sum_probs=216.9
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD 81 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~ 81 (300)
T Consensus 5 L-~e~g~S~~Ti~sY~~dl~~f--f~~-----~~~i~~~~i~~y~~~L~~-~~~~~Tin~~lsalr~F~~fl~~~~~--- 72 (263)
T cd01196 5 L-YKNNLSKNTVSSYLRTVVQY--FLN-----GKELTKPNLLEYKGYLQE-NFKAQTVNLRLQGINKYLEFIGWHDL--- 72 (263)
T ss_pred H-HHCCCCHHHHHHHHHHHHHH--HCC-----CCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCC---
T ss_conf 9-67697899999999999999--715-----588999999999999996-89899999999999999999655478---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 21222212122211122332024699998643200125610277654311000122100134333432000001111000
Q gi|255764498|r 82 NPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTM 161 (300)
Q Consensus 82 np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i 161 (300)
T Consensus 73 -~~k~~k~-~~~~~l~~~l~~~e~~~l~~~~~~~---------~~~r~~~ii~lL~~tGlRvsEl~~L~~~di~~~--~~ 139 (263)
T cd01196 73 -KLKFVKV-QQKAFLENVISDADYKFLKTALKAD---------GNEEWYFVVWFLAATGARVSELIHIKVEHVQTG--YA 139 (263)
T ss_pred -CCCCCCC-CCCCCCCCCCCHHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCC--CE
T ss_conf -6556788-8889999989999999999763136---------677699999999984999999983689882668--64
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 11122211111000012478875323210012467775200123332222211111110123442014667642598858
Q gi|255764498|r 162 IIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIR 241 (300)
Q Consensus 162 ~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lR 241 (300)
T Consensus 140 ~i~~KG~K~R~v~i~~~~~~~l~~y~~~~~-----~~~~~lF~~~-~g~~l~~~~i~~~~k~~~~~agi~~~~~~PH~lR 213 (263)
T cd01196 140 DIYSKGGKIRRLYIPKNLRVEALKWLKELN-----LDSGYIFLNR-FGKPITARGIAQQLKNYAAKYKMNPRVVYPHSFR 213 (263)
T ss_pred EEEECCCCEEEEEECHHHHHHHHHHHHHCC-----CCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 999559937887307999999999999728-----8657716699-9498889999999999999859998778872269
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 89999999858888899998558998998999645999999999982
Q gi|255764498|r 242 HAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDY 288 (300)
Q Consensus 242 ht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~ 288 (300)
T Consensus 214 HtfAt~ll~~g~dl~~vq~lLGH~si~TT~iY~~~~~~~~k~~~~k~ 260 (263)
T cd01196 214 HLFAKNFLAKYNDLALLADLMGHESIETTRIYLRKTATEQQRIVDKI 260 (263)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999869999999999589987899998807999999999987