HHsearch alignment for GI: 255764498 and conserved domain: cd01197

>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=100.00  E-value=2.8e-42  Score=265.20  Aligned_cols=178  Identities=31%  Similarity=0.427  Sum_probs=155.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Q ss_conf             22332024699998643200125610277654311000122100134333432000001111000111-22211111000
Q gi|255764498|r   97 PKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ-GKGNKERLVIL  175 (300)
Q Consensus        97 ~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~-~K~~k~R~ipi  175 (300)
T Consensus         2 r~~Lt~eEi~~ll~~~~~--------~~~~~Rd~~i~~ll~~tGlR~~El~~L~~~did~~~~~i~i~~~K~~~~~~~pl   73 (180)
T cd01197           2 RKYLTPSEVRSLLKAALD--------GRYSARDYCLMLLMFRHGLRVSEACGLKLSDIDLESRQIYIRRLKGGFSTTHPL   73 (180)
T ss_pred             CCCCCHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEECC
T ss_conf             989999999999965150--------764389999999999959529999518176561788848999704773036338


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             01247887532321001246777520012333222221111111012344201466764259885889999999858888
Q gi|255764498|r  176 SPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADL  255 (300)
Q Consensus       176 ~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~  255 (300)
T Consensus        74 ~~~~~~~l~~~~~~~~~~~-~~~~~~lF~s~-~g~~l~~~~i~~~~~~~~~~agl~~-~~~~H~lRHt~At~l~~~G~~i  150 (180)
T cd01197          74 RDDELEALKNWLEIRAWKG-LPDSDWIFLSR-RGGPLSRQQVYKLIRRLGAQAGLSI-KVHPHMLRHACGYALANQGADT  150 (180)
T ss_pred             CHHHHHHHHHHHHHHHHCC-CCCCCCEEECC-CCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHCCCCH
T ss_conf             2899999999999866204-77541122268-8884218889999999999828876-6789877899999999879999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf             899998558998998999645999999999
Q gi|255764498|r  256 RTIQILLGHTDISTTQIYTHLLPDKLQKLV  285 (300)
Q Consensus       256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~  285 (300)
T Consensus       151 ~~Iq~~LGH~~i~tT~~Yth~~~~~l~~~~  180 (180)
T cd01197         151 RLIQDYLGHRNIRHTVIYTASNAARFLNLW  180 (180)
T ss_pred             HHHHHHHCCCCHHHHHHHHHCCHHHHHHHC
T ss_conf             999998389987999999967999998629