HHsearch alignment for GI: 255764498 and conserved domain: cd01197
>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=100.00 E-value=2.8e-42 Score=265.20 Aligned_cols=178 Identities=31% Similarity=0.427 Sum_probs=155.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Q ss_conf 22332024699998643200125610277654311000122100134333432000001111000111-22211111000
Q gi|255764498|r 97 PKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ-GKGNKERLVIL 175 (300)
Q Consensus 97 ~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~-~K~~k~R~ipi 175 (300)
T Consensus 2 r~~Lt~eEi~~ll~~~~~--------~~~~~Rd~~i~~ll~~tGlR~~El~~L~~~did~~~~~i~i~~~K~~~~~~~pl 73 (180)
T cd01197 2 RKYLTPSEVRSLLKAALD--------GRYSARDYCLMLLMFRHGLRVSEACGLKLSDIDLESRQIYIRRLKGGFSTTHPL 73 (180)
T ss_pred CCCCCHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEECC
T ss_conf 989999999999965150--------764389999999999959529999518176561788848999704773036338
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 01247887532321001246777520012333222221111111012344201466764259885889999999858888
Q gi|255764498|r 176 SPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADL 255 (300)
Q Consensus 176 ~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~ 255 (300)
T Consensus 74 ~~~~~~~l~~~~~~~~~~~-~~~~~~lF~s~-~g~~l~~~~i~~~~~~~~~~agl~~-~~~~H~lRHt~At~l~~~G~~i 150 (180)
T cd01197 74 RDDELEALKNWLEIRAWKG-LPDSDWIFLSR-RGGPLSRQQVYKLIRRLGAQAGLSI-KVHPHMLRHACGYALANQGADT 150 (180)
T ss_pred CHHHHHHHHHHHHHHHHCC-CCCCCCEEECC-CCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHCCCCH
T ss_conf 2899999999999866204-77541122268-8884218889999999999828876-6789877899999999879999
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 899998558998998999645999999999
Q gi|255764498|r 256 RTIQILLGHTDISTTQIYTHLLPDKLQKLV 285 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~ 285 (300)
T Consensus 151 ~~Iq~~LGH~~i~tT~~Yth~~~~~l~~~~ 180 (180)
T cd01197 151 RLIQDYLGHRNIRHTVIYTASNAARFLNLW 180 (180)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCHHHHHHHC
T ss_conf 999998389987999999967999998629