HHsearch alignment for GI: 255764498 and conserved domain: cd01198
>cd01198 INT_ASSRA_C Archaeal site-specific recombinase A (ASSRA), DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. Members of this CD are archael in origin. No biochemical characterization is available for the proteins of this subgroup at this point.
Probab=100.00 E-value=5.7e-43 Score=269.17 Aligned_cols=178 Identities=22% Similarity=0.301 Sum_probs=145.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCCCHHHH
Q ss_conf 33202469999864320012561027765431100012210013433343200000111100011122211-11100001
Q gi|255764498|r 99 TLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNK-ERLVILSP 177 (300)
Q Consensus 99 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k-~R~ipi~~ 177 (300)
T Consensus 1 iLt~eev~~li~~~~------------~~rdraii~lL~~TGlRvsEl~~L~~~DId~~~~~i~V~~~~~k~~~~~~~~~ 68 (186)
T cd01198 1 LISVEAMRELIADIT------------HPLERAVIVGLAKTGIRRGELINLDRRDVNLDKPTLYLKPASNKRSNRTLFPD 68 (186)
T ss_pred CCCHHHHHHHHHCCC------------CHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEECCCCCCCCEEECCCH
T ss_conf 989999999998379------------87999999999995879999977928776865787885278898660555838
Q ss_pred HHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC------CCCCHHHHHHHHHHHHHH
Q ss_conf 247-8875323210012467775200123332222211111110123442014667------642598858899999998
Q gi|255764498|r 178 SAL-HALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK------KNISPHIIRHAFASHLLE 250 (300)
Q Consensus 178 ~~~-~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~------~~~t~H~lRht~at~l~~ 250 (300)
T Consensus 69 ~~~~~~~~~~~~~r~----~~~~~~lF~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~vtPH~lRHtfAT~Ll~ 143 (186)
T cd01198 69 LETELFRWLAIRPRT----TSPADALFIGT-QDGWGCRRLVYEMVTGMARRHGEHRPWGDLEENFTPHCFRHFFTTWLRR 143 (186)
T ss_pred HHHHHHHHHHHHHHH----CCCCCCEEEEC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999999987753----58998267617-9997768689999999999977643212114675851638999999998
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHH
Q ss_conf 5888889999855899899899964599999999998280111
Q gi|255764498|r 251 GGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAK 293 (300)
Q Consensus 251 ~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~ 293 (300)
T Consensus 144 ~G~dl~~vq~lLGHssi~tT~~Y~h~~~~~l~e~y~k~~Pr~~ 186 (186)
T cd01198 144 RGGDRGVVQELRGDSRDEAIDTYTHIWGDELREAYLKHIPSLG 186 (186)
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 6999999999948998899999984799999999998588998