HHsearch alignment for GI: 255764498 and conserved domain: cd01198

>cd01198 INT_ASSRA_C Archaeal site-specific recombinase A (ASSRA), DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. Members of this CD are archael in origin. No biochemical characterization is available for the proteins of this subgroup at this point.
Probab=100.00  E-value=5.7e-43  Score=269.17  Aligned_cols=178  Identities=22%  Similarity=0.301  Sum_probs=145.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCCCHHHH
Q ss_conf             33202469999864320012561027765431100012210013433343200000111100011122211-11100001
Q gi|255764498|r   99 TLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNK-ERLVILSP  177 (300)
Q Consensus        99 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k-~R~ipi~~  177 (300)
T Consensus         1 iLt~eev~~li~~~~------------~~rdraii~lL~~TGlRvsEl~~L~~~DId~~~~~i~V~~~~~k~~~~~~~~~   68 (186)
T cd01198           1 LISVEAMRELIADIT------------HPLERAVIVGLAKTGIRRGELINLDRRDVNLDKPTLYLKPASNKRSNRTLFPD   68 (186)
T ss_pred             CCCHHHHHHHHHCCC------------CHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEECCCCCCCCEEECCCH
T ss_conf             989999999998379------------87999999999995879999977928776865787885278898660555838


Q ss_pred             HHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC------CCCCHHHHHHHHHHHHHH
Q ss_conf             247-8875323210012467775200123332222211111110123442014667------642598858899999998
Q gi|255764498|r  178 SAL-HALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK------KNISPHIIRHAFASHLLE  250 (300)
Q Consensus       178 ~~~-~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~------~~~t~H~lRht~at~l~~  250 (300)
T Consensus        69 ~~~~~~~~~~~~~r~----~~~~~~lF~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~vtPH~lRHtfAT~Ll~  143 (186)
T cd01198          69 LETELFRWLAIRPRT----TSPADALFIGT-QDGWGCRRLVYEMVTGMARRHGEHRPWGDLEENFTPHCFRHFFTTWLRR  143 (186)
T ss_pred             HHHHHHHHHHHHHHH----CCCCCCEEEEC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999999999987753----58998267617-9997768689999999999977643212114675851638999999998


Q ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHH
Q ss_conf             5888889999855899899899964599999999998280111
Q gi|255764498|r  251 GGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAK  293 (300)
Q Consensus       251 ~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~  293 (300)
T Consensus       144 ~G~dl~~vq~lLGHssi~tT~~Y~h~~~~~l~e~y~k~~Pr~~  186 (186)
T cd01198         144 RGGDRGVVQELRGDSRDEAIDTYTHIWGDELREAYLKHIPSLG  186 (186)
T ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             6999999999948998899999984799999999998588998