HHsearch alignment for GI: 255764498 and conserved domain: cd01199
>cd01199 INT_Tn1545_C Tn1545-related conjugative transposon integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes bacterial (gram positive) and phage integrases, including those similar to Tn1545, Tn5252, and Tn5276 conjugative transposon integrases and Lactobacillus phage phi adh integrase.
Probab=100.00 E-value=1.7e-38 Score=243.24 Aligned_cols=180 Identities=27% Similarity=0.393 Sum_probs=143.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-------------
Q ss_conf 3320246999986432001256102776543110001221001343334320000011110001112-------------
Q gi|255764498|r 99 TLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQG------------- 165 (300)
Q Consensus 99 ~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~------------- 165 (300)
T Consensus 1 yLt~eEi~~ll~~~~~~~~--------~~~~~~ii~ll~~TGlR~~Ei~~L~~~did~~~~~i~i~~~~~~~~~~~~~~~ 72 (205)
T cd01199 1 YLEKNELKALLDVLNSYKN--------NQLYADILEFLFLTGMRIGELLALQEKDIDFENKLINIDGTLDSHTGKEENGY 72 (205)
T ss_pred CCCHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCEEEEEEEEEEECCCCCCCE
T ss_conf 9398999999970514778--------76999999999997734888975909880655898999778864125666624
Q ss_pred ----CCC-CCCCCHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHCCCC-CCCC
Q ss_conf ----221-1111000012478875323210012---467775200123332222211-11111012344201466-7642
Q gi|255764498|r 166 ----KGN-KERLVILSPSALHALQMYKKTCSSM---KMTGNDLWLFPSSTKTGHLSR-QVFARDLKALAARAGIQ-KKNI 235 (300)
Q Consensus 166 ----K~~-k~R~ipi~~~~~~~l~~y~~~~~~~---~~~~~~~~lf~~~~~~~~~s~-~~~~~~~~~~~~~~gi~-~~~~ 235 (300)
T Consensus 73 ~~~~Kt~~~~R~vpl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lf~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (205)
T cd01199 73 KDTPKTKSSIRTISLSERAVEIIKRFIKRNKFDKFNPDYKDSDFLFTNKKG-NPLDLGPINSKILSKFLKDLGSQSKKHV 151 (205)
T ss_pred ECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 345778886368617999999999999971441035456877637761689-8476408999999999998575546775
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHHCCHHHHHHHHHH
Q ss_conf 598858899999998588888999985589989989-9964599999999998
Q gi|255764498|r 236 SPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQ-IYTHLLPDKLQKLVQD 287 (300)
Q Consensus 236 t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~-~Y~~~~~~~~~~~~~~ 287 (300)
T Consensus 152 ~~H~lRHT~at~l~~~G~~~~~v~~~lGHss~~tT~~iY~h~~~~~~~e~~~k 204 (205)
T cd01199 152 TTHIFRHTHISFLAEEGVPLKAIMDRVGHSDGKTTLRIYSHVTEKMKDEIVKK 204 (205)
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 76455999999999869999999998679988999888661698999999960