HHsearch alignment of GI: 255764498 and MMDB domain: 1aih_A_1-49_87-170

>1aih_A (A:1-49,A:87-170) HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1}
Probab=99.87  E-value=6e-23  Score=152.36  Aligned_cols=129  Identities=29%  Similarity=0.443  Sum_probs=104.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             22332024699998643200125610277654311000122100134333432000001111000111222111110000
Q gi|255764498|r   97 PKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILS  176 (300)
Q Consensus        97 ~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi~  176 (300)
                      .+.|+.+|..+|+.++..... |.      +  ..|+.+++.||||.||+.+|+|.-                       
T Consensus         4 ~~~l~~~e~~~l~~~~~~~~~-~~------l--~~~~~~~~~t~~r~~e~~~l~~~~-----------------------   51 (133)
T 1aih_A            4 LAFLYERDIYRLLAECDNSRN-PD------L--GLIVRICLATGARWSEAETLTQLF-----------------------   51 (133)
T ss_dssp             CCCCCHHHHHHHHHHHTTSSS-TT------H--HHHHHHHHHHCCCHHHHHTCBTSS-----------------------
T ss_pred             CCCCCHHHHHHHHHHHHHCCC-HH------H--HHHHHHHHHHCCCHHHHHHHHHCC-----------------------
T ss_conf             768999999999998646589-66------9--999999999776466788764021-----------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             12478875323210012467775200123332222211111110123442014667-64259885889999999858888
Q gi|255764498|r  177 PSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK-KNISPHIIRHAFASHLLEGGADL  255 (300)
Q Consensus       177 ~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~-~~~t~H~lRht~at~l~~~G~~~  255 (300)
                                                            +++++.|+++++.+|+.. ++++||+|||||||+|+++|+|+
T Consensus        52 --------------------------------------~~i~~~~~~~~~~agi~~~~~it~H~lRHT~At~l~~~G~d~   93 (133)
T 1aih_A           52 --------------------------------------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNI   93 (133)
T ss_dssp             --------------------------------------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCH
T ss_pred             --------------------------------------CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf             --------------------------------------110124433456765125876200246887737877447309


Q ss_pred             HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCCC
Q ss_conf             89999855899899899964599999999998280111001
Q gi|255764498|r  256 RTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKEK  296 (300)
Q Consensus       256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~~  296 (300)
                      ..||++|||+|++||++|+|++.+.++++++. +|++++++
T Consensus        94 ~~Iq~~lGH~s~~tT~~Y~~~~~~~~~~~~e~-~~~~~~kk  133 (133)
T 1aih_A           94 LVLKEILGHSTIEMTMRYAHFAPSHLESAVKF-NPLSNPAQ  133 (133)
T ss_dssp             HHHHHHHTCSSHHHHGGGGGGSCCCTTHHHHH-STTTSCCC
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH-CCCCCCCC
T ss_conf             89999808998899987766799999999985-95658796