HHsearch alignment of GI: 255764498 and MMDB domain: 1aih_A_1-49_87-170
>1aih_A (A:1-49,A:87-170) HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1}
Probab=99.87 E-value=6e-23 Score=152.36 Aligned_cols=129 Identities=29% Similarity=0.443 Sum_probs=104.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 22332024699998643200125610277654311000122100134333432000001111000111222111110000
Q gi|255764498|r 97 PKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILS 176 (300)
Q Consensus 97 ~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi~ 176 (300)
.+.|+.+|..+|+.++..... |. + ..|+.+++.||||.||+.+|+|.-
T Consensus 4 ~~~l~~~e~~~l~~~~~~~~~-~~------l--~~~~~~~~~t~~r~~e~~~l~~~~----------------------- 51 (133)
T 1aih_A 4 LAFLYERDIYRLLAECDNSRN-PD------L--GLIVRICLATGARWSEAETLTQLF----------------------- 51 (133)
T ss_dssp CCCCCHHHHHHHHHHHTTSSS-TT------H--HHHHHHHHHHCCCHHHHHTCBTSS-----------------------
T ss_pred CCCCCHHHHHHHHHHHHHCCC-HH------H--HHHHHHHHHHCCCHHHHHHHHHCC-----------------------
T ss_conf 768999999999998646589-66------9--999999999776466788764021-----------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 12478875323210012467775200123332222211111110123442014667-64259885889999999858888
Q gi|255764498|r 177 PSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK-KNISPHIIRHAFASHLLEGGADL 255 (300)
Q Consensus 177 ~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~-~~~t~H~lRht~at~l~~~G~~~ 255 (300)
+++++.|+++++.+|+.. ++++||+|||||||+|+++|+|+
T Consensus 52 --------------------------------------~~i~~~~~~~~~~agi~~~~~it~H~lRHT~At~l~~~G~d~ 93 (133)
T 1aih_A 52 --------------------------------------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNI 93 (133)
T ss_dssp --------------------------------------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCH
T ss_pred --------------------------------------CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf --------------------------------------110124433456765125876200246887737877447309
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCCC
Q ss_conf 89999855899899899964599999999998280111001
Q gi|255764498|r 256 RTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKEK 296 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~~ 296 (300)
..||++|||+|++||++|+|++.+.++++++. +|++++++
T Consensus 94 ~~Iq~~lGH~s~~tT~~Y~~~~~~~~~~~~e~-~~~~~~kk 133 (133)
T 1aih_A 94 LVLKEILGHSTIEMTMRYAHFAPSHLESAVKF-NPLSNPAQ 133 (133)
T ss_dssp HHHHHHHTCSSHHHHGGGGGGSCCCTTHHHHH-STTTSCCC
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH-CCCCCCCC
T ss_conf 89999808998899987766799999999985-95658796