Query gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 300
No_of_seqs 163 out of 12975
Neff 9.6
Searched_HMMs 33803
Date Wed Jun 1 15:56:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764498.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1a0p_A Site-specific recombin 100.0 3.3E-32 9.7E-37 206.2 4.1 189 90-286 1-190 (190)
2 >1xo0_A Recombinase CRE; CRE r 100.0 1.8E-29 5.3E-34 190.3 3.9 174 98-278 2-196 (196)
3 >2a3v_A Site-specific recombin 99.9 1.9E-28 5.7E-33 184.3 1.2 127 90-291 2-128 (128)
4 >1z1b_A Integrase; protein-DNA 99.9 1.7E-26 4.9E-31 173.0 3.5 175 90-279 4-182 (190)
5 >1z19_A Integrase; protein-DNA 99.9 5.5E-27 1.6E-31 175.8 -2.5 182 89-285 3-189 (190)
6 >1ae9_A Lambda integrase; DNA 99.9 9.3E-26 2.8E-30 168.7 -2.2 172 97-282 1-175 (179)
7 >1aih_A HP1 integrase; DNA int 99.9 6E-23 1.8E-27 152.4 4.7 129 97-296 4-133 (133)
8 >1xo0_A Recombinase CRE; CRE r 99.7 7.1E-18 2.1E-22 122.9 4.6 102 2-104 12-113 (114)
9 >1a0p_A Site-specific recombin 99.6 1.2E-16 3.7E-21 115.6 4.5 87 2-88 13-99 (100)
10 >2kd1_A DNA integration/recomb 99.6 3.3E-15 9.8E-20 107.3 6.8 98 5-103 20-117 (118)
11 >2kiw_A INT protein; alpha, st 99.5 8.1E-14 2.4E-18 99.3 8.2 97 5-104 14-110 (111)
12 >2a3v_A Site-specific recombin 99.5 5.9E-14 1.8E-18 100.1 6.2 79 5-85 15-94 (94)
13 >2key_A Putative phage integra 99.4 1.2E-13 3.7E-18 98.2 4.6 89 5-95 22-111 (112)
14 >2oxo_A Integrase; DNA-binding 99.4 8.1E-13 2.4E-17 93.4 7.6 87 5-94 16-102 (103)
15 >2khq_A Integrase; all-alpha, 99.4 1.6E-12 4.6E-17 91.8 8.1 89 5-96 17-105 (110)
16 >2kkp_A Phage integrase; SAM-l 99.3 7.1E-13 2.1E-17 93.8 3.2 89 11-100 2-90 (91)
17 >2kob_A Uncharacterized protei 99.3 6.5E-12 1.9E-16 88.2 6.9 88 6-98 18-105 (108)
18 >2kkv_A Integrase; protein str 99.3 2.1E-12 6.1E-17 91.1 2.6 101 2-105 17-120 (121)
19 >1z19_A Integrase; protein-DNA 99.2 7.9E-11 2.3E-15 81.9 7.4 78 5-85 16-93 (93)
20 >2kj9_A Integrase; DNA_BRE_C s 99.1 2.3E-11 6.9E-16 85.0 3.6 94 1-97 20-114 (118)
21 >1z1b_A Integrase; protein-DNA 99.1 1.4E-10 4.2E-15 80.4 7.4 78 5-85 15-92 (92)
22 >2kj8_A Putative prophage CPS- 99.1 1.2E-10 3.5E-15 80.9 6.2 96 5-103 19-117 (118)
23 >2kj5_A Phage integrase; GFT N 99.1 4.8E-11 1.4E-15 83.1 2.7 95 1-98 16-111 (116)
24 >2khv_A Phage integrase; solut 99.0 2.8E-10 8.1E-15 78.7 5.6 86 6-95 17-103 (106)
25 >2a3v_A Site-specific recombin 93.3 0.12 3.5E-06 28.5 4.2 43 38-80 2-44 (94)
26 >1xo0_A Recombinase CRE; CRE r 90.7 0.2 6E-06 27.1 3.0 41 38-78 1-42 (114)
27 >1a0p_A Site-specific recombin 89.4 0.41 1.2E-05 25.4 3.7 40 39-78 3-43 (100)
28 >1flo_A FLP recombinase; tyros 88.1 1.6 4.8E-05 21.9 6.2 141 130-276 28-195 (272)
29 >1aih_A HP1 integrase; DNA int 83.2 0.34 1E-05 25.8 0.6 22 163-184 11-32 (37)
30 >2a3v_A Site-specific recombin 81.2 0.43 1.3E-05 25.3 0.4 25 152-176 1-26 (27)
31 >3gbg_A TCP pilus virulence re 35.5 27 0.00079 14.8 5.5 70 211-285 196-270 (276)
32 >2f4q_A Type I topoisomerase, 23.2 43 0.0013 13.6 1.7 40 146-185 6-48 (54)
33 >2o8x_A Probable RNA polymeras 22.8 45 0.0013 13.5 2.8 41 249-290 28-68 (70)
No 1
>>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:101-290)
Probab=99.97 E-value=3.3e-32 Score=206.24 Aligned_cols=189 Identities=44% Similarity=0.642 Sum_probs=126.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 12221112233202469999864320012561027765431100012210013433343200000111100011122211
Q gi|255764498|r 90 PKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNK 169 (300)
Q Consensus 90 ~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k 169 (300)
||.+++.++++++||+.++++++.. ......|+++||.++++||||+||+++|+|+||+++++.+.+..++++
T Consensus 1 PK~~~~~~~~lt~eel~~ll~~~~~-------~~~~~~r~~~i~~l~~~TGlR~~Ei~~L~~~di~~~~~~i~i~~~~~~ 73 (190)
T 1a0p_A 1 PKLPQRLPKDLSEAQVERLLQAPLI-------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 73 (190)
T ss_dssp --------CCCCHHHHHHHHHCSCT-------TSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEECSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCCCCEEEECCCCCC
T ss_conf 6411023222222222222222210-------113368999999986564120455405849990542328996688982
Q ss_pred CCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1110000124788753232100-124677752001233322222111111101234420146676425988588999999
Q gi|255764498|r 170 ERLVILSPSALHALQMYKKTCS-SMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHL 248 (300)
Q Consensus 170 ~R~ipi~~~~~~~l~~y~~~~~-~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l 248 (300)
....+..+........+..... ...........+..... .+......................++++|++||||||.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~Rht~~t~~ 152 (190)
T 1a0p_A 74 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHL 152 (190)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTS-SBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred CCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 0101001110035677776520211223456554432222-321117899999999999468999877651889999999
Q ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 98588888999985589989989996459999999999
Q gi|255764498|r 249 LEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQ 286 (300)
Q Consensus 249 ~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~ 286 (300)
+++|+|+..||++|||+|++||++|+|++++.++++++
T Consensus 153 ~~~~~~~~~i~~~lGH~s~~~T~~Y~~~~~~~~~~a~~ 190 (190)
T 1a0p_A 153 LNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 190 (190)
T ss_dssp HHHCSSCGGGSSCC--CCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 98789999999881899889999997789999998609
No 2
>>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:115-310)
Probab=99.95 E-value=1.8e-29 Score=190.29 Aligned_cols=174 Identities=11% Similarity=0.081 Sum_probs=133.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-------CCCCC
Q ss_conf 23320246999986432001256102776543110001221001343334320000011110001112-------22111
Q gi|255764498|r 98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQG-------KGNKE 170 (300)
Q Consensus 98 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~-------K~~k~ 170 (300)
++|+++|+.++++++... ......|+++++.+++.||||++|+++|+|+||+++++.+.+.. ++.+.
T Consensus 2 r~lt~~e~~~l~~~~~~~------~~~~~~r~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~~~~~~~~~~~~~~~~~~ 75 (196)
T 1xo0_A 2 LAFERTDFDQVRSLMENS------DRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAG 75 (196)
T ss_dssp CCCCHHHHHHHHHHHSSC------CCHHHHHHHHHHHHHHHHCCCHHHHHHCBGGGEEEEETTEEEEEECCCCSSSSCSC
T ss_pred CCCHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
T ss_conf 430178888999864030------24678999999974223566676653101222222210011000000012456662
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCC--------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 110000124788753232100124677--------------752001233322222111111101234420146676425
Q gi|255764498|r 171 RLVILSPSALHALQMYKKTCSSMKMTG--------------NDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNIS 236 (300)
Q Consensus 171 R~ipi~~~~~~~l~~y~~~~~~~~~~~--------------~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t 236 (300)
+.+|+.+.....+..+........... .....++....+.+++...+...++..+...|+.. +++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (196)
T 1xo0_A 76 VEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYL-AWS 154 (196)
T ss_dssp EEEEECHHHHHHHHHHHHHHCGGGSTTSBSSCEECTTSCEECCSSCCCCHHHHHHHHHHHHHHHHCSCCCSCCSCS-SCC
T ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CCC
T ss_conf 1200478899999988887212211220122213432124543356431158888889999999999997288888-878
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCH
Q ss_conf 988588999999985888889999855899899899964599
Q gi|255764498|r 237 PHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLP 278 (300)
Q Consensus 237 ~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~ 278 (300)
||+|||||||.+++.|+|+..||++|||+|++||++|+|+.+
T Consensus 155 ~h~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~~d 196 (196)
T 1xo0_A 155 GHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD 196 (196)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHTCSSSSSHHHHSTTSG
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCH
T ss_conf 861389999999987899999998819998899999972536
No 3
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:95-144,A:243-320)
Probab=99.94 E-value=1.9e-28 Score=184.32 Aligned_cols=127 Identities=41% Similarity=0.634 Sum_probs=111.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 12221112233202469999864320012561027765431100012210013433343200000111100011122211
Q gi|255764498|r 90 PKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNK 169 (300)
Q Consensus 90 ~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k 169 (300)
||.+++.|++++.+|+.++++.+. .||++|+.++|.||||+||+++|+++.=
T Consensus 2 pk~~~~lp~~l~~~e~~~ll~~~~-------------~r~~~~~~ll~~~GlR~~E~~~l~~s~~--------------- 53 (128)
T 2a3v_A 2 SQLERKLPVVLTRDEIRRLLEIVD-------------PKHQLPIKLLYGSGLRLMECMRLRVNET--------------- 53 (128)
T ss_dssp CCCCCCCCCCCCHHHHHHHTTSSC-------------HHHHHHHHHHHHSCCCHHHHHTCBGCHH---------------
T ss_pred HHHHCCCCCCCHHHHHHHCCCCCC-------------HHHHHHHHHHHHHCCCCCCCCCCHHCHH---------------
T ss_conf 000001222310355420000000-------------2588899998750012233333111689---------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11100001247887532321001246777520012333222221111111012344201466764259885889999999
Q gi|255764498|r 170 ERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLL 249 (300)
Q Consensus 170 ~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~ 249 (300)
+++..++++++++|++. +++||+|||||||.++
T Consensus 54 ----------------------------------------------~i~~~~k~~~~~agi~~-~~~~H~lRHT~aT~l~ 86 (128)
T 2a3v_A 54 ----------------------------------------------VLQKAVRRSAQEAGIEK-TVTCHTLRHSFATHLL 86 (128)
T ss_dssp ----------------------------------------------HHHHHHHHHHHTTCCCS-CCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHH
T ss_conf ----------------------------------------------99999999999859999-9987114999999999
Q ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCH
Q ss_conf 858888899998558998998999645999999999982801
Q gi|255764498|r 250 EGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPL 291 (300)
Q Consensus 250 ~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~ 291 (300)
++|+|+..||++|||+|++||++|+|++++.+++++++++|+
T Consensus 87 ~~G~~~~~i~~~lGHss~~~t~~Y~h~~~~~~~~~~~~~~~L 128 (128)
T 2a3v_A 87 EVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLSPLSRL 128 (128)
T ss_dssp HTTCCHHHHHHHHTCSSHHHHGGGCC------CCCCCHHHHC
T ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 878999999988489998999998846998999986175249
No 4
>>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:167-356)
Probab=99.92 E-value=1.7e-26 Score=173.04 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=121.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC-
Q ss_conf 1222111223320246999986432001256102776543110001221001343334320000011110001112221-
Q gi|255764498|r 90 PKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGN- 168 (300)
Q Consensus 90 ~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~- 168 (300)
|+.+++.+++++++|+.++++++... ..++++++.++++||||+||+++|+|+||++++..+.+...++
T Consensus 4 ~k~~~~~~~~lt~eei~~l~~~~~~~----------~~~~~~~~~l~~~tGlR~~E~~~l~~~di~~~~~~~~~~~~~~~ 73 (190)
T 1z1b_A 4 AAKSKVRRSRLTADEYLKIYQAAESS----------PCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVK 73 (190)
T ss_dssp CCCCCCCBCCCCHHHHHHHHHHTTSS----------CHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEEECTTTCCE
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCC----------CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 22334433222036676642012245----------50245788999874124466433332212232222223444330
Q ss_pred CCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCCHHHHHHHHH
Q ss_conf 11110--0001247887532321001246777520012333222221111111012344201466-76425988588999
Q gi|255764498|r 169 KERLV--ILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQ-KKNISPHIIRHAFA 245 (300)
Q Consensus 169 k~R~i--pi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~-~~~~t~H~lRht~a 245 (300)
....+ +.+......+..+. .........++|++.. ++..........+..+.+.++.. ....++|.+|||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~t~a 148 (190)
T 1z1b_A 74 IAIPTALHIDALGISMKETLD----KCKEILGGETIIASTR-REPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLS 148 (190)
T ss_dssp EEEETTCEETTTTEEHHHHHH----HHHHHTCSSBSSCCTT-SCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH----HCCCCCCCCEEECCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 212554210256776544333----1034577731411556-77578889999999999985999788999748289999
Q ss_pred HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHH
Q ss_conf 9999858888899998558998998999645999
Q gi|255764498|r 246 SHLLEGGADLRTIQILLGHTDISTTQIYTHLLPD 279 (300)
Q Consensus 246 t~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~ 279 (300)
|.|+++|+|+..||++|||+|++||++|.+...+
T Consensus 149 t~l~~~g~~~~~i~~~lGH~~~~~T~~yy~~~~~ 182 (190)
T 1z1b_A 149 ARLYEKQISDKFAQHLLGHKSDTMASQXRDDRGR 182 (190)
T ss_dssp HHHHHHHTCHHHHHHHHTCSSHHHHHHHTCCTTS
T ss_pred HHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHH
T ss_conf 9999869999999998389988999988327487
No 5
>>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:94-283)
Probab=99.91 E-value=5.5e-27 Score=175.85 Aligned_cols=182 Identities=14% Similarity=0.053 Sum_probs=117.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 21222111223320246999986432001256102776543110001221001343334320000011110001112221
Q gi|255764498|r 89 LPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGN 168 (300)
Q Consensus 89 ~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~ 168 (300)
.|+.++..+++++++|+.++++.+... ..++++++.++++||||+||+++|+|+||++++..+.+..++.
T Consensus 3 k~k~~~~~~~~lt~ee~~~l~~~~~~~----------~~~~~~~~~l~~~tG~R~~El~~l~~~di~~~~~~~~i~~~~~ 72 (190)
T 1z19_A 3 RAAKSKVRRSRLTADEYLKIYQAAESS----------PCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGV 72 (190)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHGGGS----------CHHHHHHHHHHHHSCCCHHHHTTCBGGGEETTEEEEECTTTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCHH----------HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEECCCCCC
T ss_conf 122222222333036676420221002----------2788999999998076533445454202312420000146785
Q ss_pred CC-CCCH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCCHHHHHHHH
Q ss_conf 11-1100--001247887532321001246777520012333222221111111012344201-4667642598858899
Q gi|255764498|r 169 KE-RLVI--LSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARA-GIQKKNISPHIIRHAF 244 (300)
Q Consensus 169 k~-R~ip--i~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~-gi~~~~~t~H~lRht~ 244 (300)
+. ..++ ........+..+... . ......++|.... +.+.........+....... +......++|.+||++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 147 (190)
T 1z19_A 73 KIAIPTALHIDALGISXKETLDKC-K---EILGGETIIASTR-REPLSSGTVSRYFXRARKASGLSFEGDPPTFHELRSL 147 (190)
T ss_dssp EEEEETTCEETTTTEEHHHHHHHH-H---HHHCSSBSSCCTT-SSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH-H---CCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 133113630146788888888764-0---2577642012111-2110026777899999998477767899973849999
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCHHHHHH-HHHCCHHHHHHHH
Q ss_conf 9999985888889999855899899899-9645999999999
Q gi|255764498|r 245 ASHLLEGGADLRTIQILLGHTDISTTQI-YTHLLPDKLQKLV 285 (300)
Q Consensus 245 at~l~~~G~~~~~v~~~lGH~s~~tT~~-Y~~~~~~~~~~~~ 285 (300)
||+|+++|+|+..||++|||+|++||+. |.|++.+.+++++
T Consensus 148 a~~l~~~g~~~~~i~~~lGH~~~~~T~~~Y~~~~~~~~~~a~ 189 (190)
T 1z19_A 148 SARLYEKQISDKFAQHLLGHKSDTXASQXRDDRGREWDKIEI 189 (190)
T ss_dssp HHHHHHHHTCHHHHHHHHTCSSSCC----------CCCCCCC
T ss_pred HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 999998698999999994899889999985274858999864
No 6
>>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Bacteriophage lambda} (A:)
Probab=99.90 E-value=9.3e-26 Score=168.70 Aligned_cols=172 Identities=15% Similarity=0.084 Sum_probs=107.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH-
Q ss_conf 2233202469999864320012561027765431100012210013433343200000111100011122211111000-
Q gi|255764498|r 97 PKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVIL- 175 (300)
Q Consensus 97 ~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi- 175 (300)
+++|+++|+.++++++... ..|+++++.++++||||+||+++|+|+||+++++.+.+..+..+....+.
T Consensus 1 kr~lt~~ei~~l~~~~~~~----------~~~~~~~~~l~~~tGlR~~Ei~~L~~~di~~~~~~~~~~~~~~~~~~~~~~ 70 (179)
T 1ae9_A 1 RSRLTADEYLKIYQAAESS----------PCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTAL 70 (179)
T ss_dssp CCCCCHHHHHHHHHHGGGS----------CHHHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECTTTCCEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCH
T ss_conf 9989999999999988668----------899999999999977891444025022553101222134654314303651
Q ss_pred --HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf --012478875323210012467775200123332222211111110123442014667642598858899999998588
Q gi|255764498|r 176 --SPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGA 253 (300)
Q Consensus 176 --~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~ 253 (300)
.............. .... .....+.........................+......++|.+||++++.+.++|+
T Consensus 71 ~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~ 146 (179)
T 1ae9_A 71 HIDALGISMKETLDKC--KEIL--GGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQI 146 (179)
T ss_dssp EEGGGTEEHHHHHHHH--HHHT--CCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCC--CCCC--CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 6677777544332101--2457--65313432157876532136666666531123445430268899888999999499
Q ss_pred CHHHHHHHHCCCCHHHHHHHHHCCHHHHH
Q ss_conf 88899998558998998999645999999
Q gi|255764498|r 254 DLRTIQILLGHTDISTTQIYTHLLPDKLQ 282 (300)
Q Consensus 254 ~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~ 282 (300)
|+..||++|||+|++||++|+|++.+.++
T Consensus 147 ~~~~i~~~lGH~~~~tT~~Y~~~~~~~~~ 175 (179)
T 1ae9_A 147 SDKFAQHLLGHKSDTMASQFRDDRGREWD 175 (179)
T ss_dssp CHHHHHHHHTC--------CEECSSCEEE
T ss_pred CHHHHHHHHCCCCHHHHHHHHHCCHHHHH
T ss_conf 99999999389999999998736787686
No 7
>>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} (A:1-49,A:87-170)
Probab=99.87 E-value=6e-23 Score=152.36 Aligned_cols=129 Identities=29% Similarity=0.443 Sum_probs=104.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 22332024699998643200125610277654311000122100134333432000001111000111222111110000
Q gi|255764498|r 97 PKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILS 176 (300)
Q Consensus 97 ~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi~ 176 (300)
.+.|+.+|..+|+.++..... |. + ..|+.+++.||||.||+.+|+|.-
T Consensus 4 ~~~l~~~e~~~l~~~~~~~~~-~~------l--~~~~~~~~~t~~r~~e~~~l~~~~----------------------- 51 (133)
T 1aih_A 4 LAFLYERDIYRLLAECDNSRN-PD------L--GLIVRICLATGARWSEAETLTQLF----------------------- 51 (133)
T ss_dssp CCCCCHHHHHHHHHHHTTSSS-TT------H--HHHHHHHHHHCCCHHHHHTCBTSS-----------------------
T ss_pred CCCCCHHHHHHHHHHHHHCCC-HH------H--HHHHHHHHHHCCCHHHHHHHHHCC-----------------------
T ss_conf 768999999999998646589-66------9--999999999776466788764021-----------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 12478875323210012467775200123332222211111110123442014667-64259885889999999858888
Q gi|255764498|r 177 PSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK-KNISPHIIRHAFASHLLEGGADL 255 (300)
Q Consensus 177 ~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~-~~~t~H~lRht~at~l~~~G~~~ 255 (300)
+++++.|+++++.+|+.. ++++||+|||||||+|+++|+|+
T Consensus 52 --------------------------------------~~i~~~~~~~~~~agi~~~~~it~H~lRHT~At~l~~~G~d~ 93 (133)
T 1aih_A 52 --------------------------------------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNI 93 (133)
T ss_dssp --------------------------------------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCH
T ss_pred --------------------------------------CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf --------------------------------------110124433456765125876200246887737877447309
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCCC
Q ss_conf 89999855899899899964599999999998280111001
Q gi|255764498|r 256 RTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKEK 296 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~~ 296 (300)
..||++|||+|++||++|+|++.+.++++++. +|++++++
T Consensus 94 ~~Iq~~lGH~s~~tT~~Y~~~~~~~~~~~~e~-~~~~~~kk 133 (133)
T 1aih_A 94 LVLKEILGHSTIEMTMRYAHFAPSHLESAVKF-NPLSNPAQ 133 (133)
T ss_dssp HHHHHHHTCSSHHHHGGGGGGSCCCTTHHHHH-STTTSCCC
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH-CCCCCCCC
T ss_conf 89999808998899987766799999999985-95658796
No 8
>>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:1-114)
Probab=99.71 E-value=7.1e-18 Score=122.85 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=93.5
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD 81 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~ 81 (300)
|..++|+|++|+++|..+++.|..||+..++++.+++..+|..|+.++..+|++++|+++++++|++||+||...|++..
T Consensus 12 ~~~~~~~s~~T~~~Y~~~l~~f~~~l~~~~~~~~~i~~~~i~~y~~~~~~~~~s~~Ti~~~l~~l~~f~~~~~~~~~~~~ 91 (114)
T 1xo0_A 12 FRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDS 91 (114)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTSCCGGGS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99754879999999999999999999974999678999999999999987799989999999999888999873154335
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 21222212122211122332024
Q gi|255764498|r 82 NPSDTLELPKKNHILPKTLHKDT 104 (300)
Q Consensus 82 np~~~i~~~k~~~~~~~~ls~~e 104 (300)
||+..+.. +..++.|++++.+|
T Consensus 92 ~p~~~v~~-~~~~~~p~~lt~~e 113 (114)
T 1xo0_A 92 NAVSLVMR-RIRKENVDAGERAK 113 (114)
T ss_dssp HHHHHHHH-HHHHHHHHTTCCCC
T ss_pred CCHHHHCC-CCCCCCCCCCCCCC
T ss_conf 32444213-32224555452112
No 9
>>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:1-100)
Probab=99.64 E-value=1.2e-16 Score=115.64 Aligned_cols=87 Identities=30% Similarity=0.516 Sum_probs=83.2
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD 81 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~ 81 (300)
|+.+||+|++|+.+|..+++.|..|++..++++.+++..++..|+.++..+|++++|+++++++|++||+||+++|+++.
T Consensus 13 l~~~~~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~Ti~~~l~~lr~f~~~~~~~~~i~~ 92 (100)
T 1a0p_A 13 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFRED 92 (100)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99986917999999999999999999874999266999999999999764002332125677776541133321243221
Q ss_pred CCCCCCC
Q ss_conf 2122221
Q gi|255764498|r 82 NPSDTLE 88 (300)
Q Consensus 82 np~~~i~ 88 (300)
||+.+|+
T Consensus 93 nP~~~i~ 99 (100)
T 1a0p_A 93 DPSAHLA 99 (100)
T ss_dssp CTTSCC-
T ss_pred HHHHCCC
T ss_conf 0110025
No 10
>>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579} (A:)
Probab=99.58 E-value=3.3e-15 Score=107.32 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=91.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
++++|++|++.|+..++.|..|+. .+.++.+|+..++++|+.++..+|++++|+++.++.|++||+||++.|++..||+
T Consensus 20 ~~~~s~~T~~~y~~~l~~~~~~~~-~~~~i~~i~~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~~~~~a~~~~~i~~nP~ 98 (118)
T 2kd1_A 20 RHSVGIQTAKVLKGYLNSRIIPSL-GNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVA 98 (118)
T ss_dssp HHHHCHHHHHHHHHHHTTTHHHHT-TSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHH-CCEEHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 473899999999999998762885-7807999899999999999886314899999999999999999998889563918
Q ss_pred CCCCCCCCCCCCCCCCCCH
Q ss_conf 2221212221112233202
Q gi|255764498|r 85 DTLELPKKNHILPKTLHKD 103 (300)
Q Consensus 85 ~~i~~~k~~~~~~~~ls~~ 103 (300)
.+++.|+.+++.++++|+|
T Consensus 99 ~~i~~~k~~~~~~~~lt~E 117 (118)
T 2kd1_A 99 AKTKLPKADKEELEHHHHH 117 (118)
T ss_dssp TTCCCCSCCCCSSSCCCCC
T ss_pred HHCCCCCCCCCCCCCCCCC
T ss_conf 4192899999751023667
No 11
>>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435} (A:)
Probab=99.50 E-value=8.1e-14 Score=99.26 Aligned_cols=97 Identities=11% Similarity=0.228 Sum_probs=89.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
++++|++|+..|...++.|..|++. .++.+++..++..|++++.+ +.+++|+++.++.|++||+||++.|++..||+
T Consensus 14 ~~~~s~~T~~~~~~~~~~~~~~~g~--~~i~~it~~~i~~~~~~l~~-~~s~~t~~~~~~~l~~~~~~a~~~~~i~~nP~ 90 (111)
T 2kiw_A 14 ANDVKVSSVRAREKAIQHAIERFNT--KPIQTIKKHDYQRFVDDISA-QYSKNYVDSIVASTNMIFKYAYDTRLIKAMPS 90 (111)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHTTS--SCGGGCCHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHTTSCSCCTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 6118999999999999999999878--92999359999999998864-40399999899999999999999789231818
Q ss_pred CCCCCCCCCCCCCCCCCCHH
Q ss_conf 22212122211122332024
Q gi|255764498|r 85 DTLELPKKNHILPKTLHKDT 104 (300)
Q Consensus 85 ~~i~~~k~~~~~~~~ls~~e 104 (300)
.+++.|+.+++.+++++.+|
T Consensus 91 ~~i~~~~~~~~~~~~ls~~E 110 (111)
T 2kiw_A 91 EGIKRPKKKVSVELEHHHHH 110 (111)
T ss_dssp TTCCCCSCCCCCCCSSCCCC
T ss_pred HHCCCCCCCCCHHHHCCCCC
T ss_conf 53857888877887711235
No 12
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:1-94)
Probab=99.48 E-value=5.9e-14 Score=100.05 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=73.3
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6413899999999999999999754499868899999999999999-779984353221011233432100012222221
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLS-QRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~-~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300)
+||+|++|+++|..+++.|..|+++. ++.+++..++..|+.++. +++++++|+++++++|++||+||.++|+++.||
T Consensus 15 ~~~~s~~Ti~~y~~~l~~f~~~l~~~--~~~~i~~~~i~~~~~~l~~~~~~s~~T~~~~l~~lr~f~~~~~~~~~i~~nP 92 (94)
T 2a3v_A 15 TRYYAKKTIEAYLHWITRYIHFHNKK--HPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIR 92 (94)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTTSSSC--CGGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTSSCCCCTTCC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCC--CHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 84989999999999999999997107--9444999999999999998389883269999999988875100012454322
Q ss_pred CC
Q ss_conf 22
Q gi|255764498|r 84 SD 85 (300)
Q Consensus 84 ~~ 85 (300)
++
T Consensus 93 ~~ 94 (94)
T 2a3v_A 93 FQ 94 (94)
T ss_dssp CC
T ss_pred CH
T ss_conf 00
No 13
>>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343} (A:)
Probab=99.42 E-value=1.2e-13 Score=98.17 Aligned_cols=89 Identities=17% Similarity=0.310 Sum_probs=81.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997-79984353221011233432100012222221
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQ-RKLVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~-~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300)
++++|++|++.|.+.++.|..|+++ .++.+++..+++.|+.++.. ++++++|+++.++.|++||+||++.|++..||
T Consensus 22 ~~~~~~~T~~~y~~~l~~~~~~~g~--~~l~~i~~~~i~~~~~~l~~~~~~s~~t~~~~~~~l~~~~~~a~~~~~i~~nP 99 (112)
T 2key_A 22 SRRLEIGTFRHHKSCMRKFKEYCEG--LQFHELTEDFLRDYLIYMKKTLCNADSTAQRNLSTIKIYVSAAIKKGYMENDP 99 (112)
T ss_dssp HTTSCHHHHHHHHHHHHHTTTSCSC--CCTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCC--CCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8369998999999999999876125--99798498889999999988774180688999999999999999888942187
Q ss_pred CCCCCCCCCCCC
Q ss_conf 222212122211
Q gi|255764498|r 84 SDTLELPKKNHI 95 (300)
Q Consensus 84 ~~~i~~~k~~~~ 95 (300)
+.+++.|+.+++
T Consensus 100 ~~~i~~pk~~kr 111 (112)
T 2key_A 100 FKDFGLEHHHHH 111 (112)
T ss_dssp HHHHTCCCCCSC
T ss_pred CCCEEEEECCCC
T ss_conf 201053324667
No 14
>>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage} (A:)
Probab=99.40 E-value=8.1e-13 Score=93.44 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=78.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
.+++|++|+++|...++.|..++++ .++.+++..++++|++++.++ .+++|+++.++.|++||+||++.|+++.||+
T Consensus 16 ~~~~s~~T~~~y~~~~~~~~~~~~~--~~i~~i~~~~i~~~~~~l~~~-~s~~t~~~~~~~l~~~f~~a~~~g~i~~NP~ 92 (103)
T 2oxo_A 16 SRGIKQKTLINYMSKIKAIRRGLPD--APLEDITTKEIAAMLNGYIDE-GKAASAKLIRSTLSDAFREAIAEGHITTNHV 92 (103)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHSCS--CBGGGCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 8699999999999999999999854--986662589999999999986-1605545679999999999998398567934
Q ss_pred CCCCCCCCCC
Q ss_conf 2221212221
Q gi|255764498|r 85 DTLELPKKNH 94 (300)
Q Consensus 85 ~~i~~~k~~~ 94 (300)
.+++.|+.++
T Consensus 93 ~~i~~~k~~~ 102 (103)
T 2oxo_A 93 AATRAAKSEV 102 (103)
T ss_dssp C---------
T ss_pred HHCCCCCCCC
T ss_conf 2267678777
No 15
>>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp} (A:)
Probab=99.38 E-value=1.6e-12 Score=91.80 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=80.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
++++|++|++.|+..++.|..|++. .++.+++..++++|++++.+. .+++|+++.++.|++||+||++.|+++.||+
T Consensus 17 ~~~~s~~T~~~y~~~~~~~~~~~~~--~~i~~i~~~~i~~~~~~l~~~-~s~~t~~~~~~~l~~~f~~a~~~~~i~~nP~ 93 (110)
T 2khq_A 17 LPHVSESTKRHYESAYKHIKDHFRH--KLLKDIKRTEYQKFLNEYGLT-HSYETIRKLNSYIRNAFDDAIHEGYVIKNPT 93 (110)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHCSS--CBGGGCCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHTTCCCCCGG
T ss_pred HCCCCHHHHHHHHHHHHCCHHHHCC--CHHHHCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 2778999999999988601777381--068543699999999986301-5889999999999999999998879101987
Q ss_pred CCCCCCCCCCCC
Q ss_conf 222121222111
Q gi|255764498|r 85 DTLELPKKNHIL 96 (300)
Q Consensus 85 ~~i~~~k~~~~~ 96 (300)
.+++.|+..++.
T Consensus 94 ~~i~~~~~~~~~ 105 (110)
T 2khq_A 94 YKAELHASVLEH 105 (110)
T ss_dssp GGCCCCCGGGCC
T ss_pred CCCEECCCHHHH
T ss_conf 778746431121
No 16
>>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073} (A:27-117)
Probab=99.32 E-value=7.1e-13 Score=93.77 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999997544998688999999999999997799843532210112334321000122222212222121
Q gi|255764498|r 11 NTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELP 90 (300)
Q Consensus 11 ~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i~~~ 90 (300)
+|+++|+.+++.|..++. .+.++.+++..++.+|+.++.++|++++|+++.++.|+++|+||+..|++..||+..+..|
T Consensus 2 ~T~~~y~~~~~~~~~~~~-g~~~i~~it~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~~f~~a~~~~~i~~nP~~~i~~p 80 (91)
T 2kkp_A 2 STWESYETVLRLHVIPTL-GSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQARESGLLLQNPTEAAKPP 80 (91)
T ss_dssp CCCSHHHHHHHHHHCCCC-CTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTTSCSSCGGGGSCCC
T ss_pred CCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC
T ss_conf 509899999999899995-8873766707999999999997587768899999999999999998899441918429789
Q ss_pred CCCCCCCCCC
Q ss_conf 2221112233
Q gi|255764498|r 91 KKNHILPKTL 100 (300)
Q Consensus 91 k~~~~~~~~l 100 (300)
+.+++.++++
T Consensus 81 k~~~~~~~~l 90 (91)
T 2kkp_A 81 RHPLEHHHHH 90 (91)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCC
T ss_conf 9986556678
No 17
>>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753} (A:)
Probab=99.29 E-value=6.5e-12 Score=88.18 Aligned_cols=88 Identities=22% Similarity=0.236 Sum_probs=78.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 41389999999999999999975449986889999999999999977998435322101123343210001222222122
Q gi|255764498|r 6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSD 85 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~ 85 (300)
+|+|++|+++|+..++.|..|++.. .+.+++..++++|++ +.+.+++|+++.+++|++||+||++.|++..||+.
T Consensus 18 ~~~s~~T~~~y~~~~~~~~~~~g~~--~i~~it~~~i~~~l~---~~~~s~~t~~~~~~~l~~~~~~a~~~~~i~~NP~~ 92 (108)
T 2kob_A 18 DGVSVSQLNSYKNYCRNHLSPLYMK--SLSEILPADIQSIIN---ETKLAKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp HTCCHHHHHHHHHHHHHTSHHHHTS--BGGGCCHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CCCCCCEEEHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 7868465312333331221002775--401026888740000---10101889999999999999999877892369053
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 2212122211122
Q gi|255764498|r 86 TLELPKKNHILPK 98 (300)
Q Consensus 86 ~i~~~k~~~~~~~ 98 (300)
++..|+.+++.++
T Consensus 93 ~i~~~~~~~~~~~ 105 (108)
T 2kob_A 93 YVRIPKIALEHHH 105 (108)
T ss_dssp TCCCCCCCCSSCC
T ss_pred CCCCCCCCCCCCC
T ss_conf 0857898864456
No 18
>>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp} (A:)
Probab=99.25 E-value=2.1e-12 Score=91.10 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=84.7
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHH-HHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 646641389999999999999999-9754499868899999999999999779984353221011233432100012222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQN-FLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRK 80 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~-~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~ 80 (300)
|..+++++++|++.|+..++.|.. +++ +.++.+++..++..|++.+.++ .+++|+++.++.|+++|+||+..|++.
T Consensus 17 ~~~~~~~~~~T~~~y~~~~~~~i~~~~g--~~~i~~it~~~i~~~~~~l~~~-~~~~t~~~~~~~l~~~~~~Av~~~~i~ 93 (121)
T 2kkv_A 17 HESNKRWSEDHRSRVLRYLELYIFPHIG--SSDIRQLKTSHLLAPIKEVDTS-GKHDVAQRLQQRVTAIMRYAVQNDYID 93 (121)
T ss_dssp HTTCCSSCHHHHHHHHHHHHHHHSSSST--TSCTTCCCSGGGHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHHCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9977978884999999999989999938--8269997637667777487504-787999999999999999999878901
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCHHH
Q ss_conf 22122221212--22111223320246
Q gi|255764498|r 81 DNPSDTLELPK--KNHILPKTLHKDTI 105 (300)
Q Consensus 81 ~np~~~i~~~k--~~~~~~~~ls~~e~ 105 (300)
.||+.++..++ .....+++|+.+|+
T Consensus 94 ~NP~~~v~~~~~~~~~~~~~~lt~~Ei 120 (121)
T 2kkv_A 94 SNPASDMAGALSTTKARHYPLEHHHHH 120 (121)
T ss_dssp SCSCSSSSCCCSCCCCCSSCCTTCCCC
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 186878987469999898998766677
No 19
>>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:1-93)
Probab=99.17 E-value=7.9e-11 Score=81.86 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=71.3
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
++++|++|++.|...++.|..|+++ .++.+++..+++.|++.+.++ .+++|+++.+++|++||+||++.|++..||+
T Consensus 16 ~~~~~~~T~~~y~~~~~~~~~~~g~--~~i~~it~~~i~~~~~~~~~~-~s~~t~~~~~~~l~~~f~~a~~~~~i~~NP~ 92 (93)
T 1z19_A 16 SRGIKQKTLINYXSKIKAIRRGLPD--APLEDITTKEIAAXLNGYIDE-GKAASAKLIRSTLSDAFREAIAEGHITTNHV 92 (93)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHSCS--CBGGGCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTTSCSCCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHCC--CCHHHCCHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 7599999999999999999999769--996879999999999999872-0589999999988887424412445422101
Q ss_pred C
Q ss_conf 2
Q gi|255764498|r 85 D 85 (300)
Q Consensus 85 ~ 85 (300)
.
T Consensus 93 a 93 (93)
T 1z19_A 93 A 93 (93)
T ss_dssp T
T ss_pred C
T ss_conf 1
No 20
>>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} (A:)
Probab=99.14 E-value=2.3e-11 Score=84.97 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=79.4
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 964664138999999999999999-9975449986889999999999999977998435322101123343210001222
Q gi|255764498|r 1 MMSSERASSINTLSAYKRDLKEMQ-NFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLR 79 (300)
Q Consensus 1 ~l~~~R~~S~~T~~~Y~~~l~~f~-~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~ 79 (300)
+|...+++|++|+..|.+.+..++ .+++ +.++.+++..++..|++.+.+. .+++|+++.++.|+++|+||++.|++
T Consensus 20 ~l~~~~~~~~~T~~~~~~~~~~~i~~~~g--~~~i~~it~~~i~~~~~~~~~~-~s~~t~~~~~~~l~~if~~Av~~~~i 96 (118)
T 2kj9_A 20 WFATKTTWSEDYQRSVWTRLETYLFPDIG--NKDIAELDTGDLLVPIKKIEKL-GYLEIAMRVKQYATAIMRYAVQQKMI 96 (118)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHTSSTTGG--GSBGGGCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99987888887999999999988789867--8859995589999999999990-79288999999999999999987881
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 222122221212221112
Q gi|255764498|r 80 KDNPSDTLELPKKNHILP 97 (300)
Q Consensus 80 ~~np~~~i~~~k~~~~~~ 97 (300)
+.||+.++..|+......
T Consensus 97 ~~NP~~~v~~~k~~~~~~ 114 (118)
T 2kj9_A 97 RFNPAYDLEGAVQKLEHH 114 (118)
T ss_dssp SSCHHHHCCSCSSSSSSC
T ss_pred CCCCHHHHHHHCCCCCCC
T ss_conf 218488898766898655
No 21
>>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:75-166)
Probab=99.14 E-value=1.4e-10 Score=80.38 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=71.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
.+++|++|+..|+..++.|..+++. .++.++++.+++.|+..+.++ .+++|+++.++.|++||+||+..|++..||+
T Consensus 15 ~~~~s~~T~~~y~~~~~~~~~~~g~--~~i~~i~~~~i~~~~~~~~~~-~s~~t~~~~~~~l~~~~~~av~~~~i~~NP~ 91 (92)
T 1z1b_A 15 SRGIKQKTLINYMSKIKAIRRGLPD--APLEDITTKEIAAMLNGYIDE-GKAASAKLIRSTLSDAFREAIAEGHITTNHV 91 (92)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHSCS--CBGGGCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHCC--CCHHHCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 4578887999999999999999768--987881299999999999851-3799999999997665642110012333222
Q ss_pred C
Q ss_conf 2
Q gi|255764498|r 85 D 85 (300)
Q Consensus 85 ~ 85 (300)
.
T Consensus 92 a 92 (92)
T 1z1b_A 92 A 92 (92)
T ss_dssp T
T ss_pred C
T ss_conf 2
No 22
>>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12} (A:)
Probab=99.12 E-value=1.2e-10 Score=80.89 Aligned_cols=96 Identities=10% Similarity=0.155 Sum_probs=80.3
Q ss_pred HHHCCHHHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 64138999999999999999-99754499868899999999999999779984353221011233432100012222221
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQ-NFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~-~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300)
+++++++|+..|...++.++ .+++ +.++.+++..++.+|+.++.+. .+++|+++.++.|+++|+||+..|++..||
T Consensus 19 ~~~~~~~t~~~~~~~~~~~i~~~~g--~~~l~~i~~~~i~~~~~~~~~~-~s~~t~~~~~~~l~~~~~~A~~~g~i~~NP 95 (118)
T 2kj8_A 19 KQVWSVGYATELAKMFDDDILPIIG--GLEIQDIEPMQLLEVIRRFEDR-GAMERANKARRRCGEVFRYAIVTGRAKYNP 95 (118)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHT--TSBTTSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHHTTSCSCCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHHCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHCCCHHCCC
T ss_conf 0418999999999999999788858--7809991899999999999983-994488999999999999999868830087
Q ss_pred CCCCCCCCCCCCCC--CCCCCH
Q ss_conf 22221212221112--233202
Q gi|255764498|r 84 SDTLELPKKNHILP--KTLHKD 103 (300)
Q Consensus 84 ~~~i~~~k~~~~~~--~~ls~~ 103 (300)
+.++..++...+.+ +++++|
T Consensus 96 ~~~i~~~~~~~~~~~~~~lt~E 117 (118)
T 2kj8_A 96 APDLADAMKGYRKKNLEHHHHH 117 (118)
T ss_dssp HHHHHHHHHHGGGTSCCSSCSC
T ss_pred HHHHHHHCCCCCCCCCCCCCCC
T ss_conf 7789863699888777555677
No 23
>>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:)
Probab=99.07 E-value=4.8e-11 Score=83.11 Aligned_cols=95 Identities=9% Similarity=0.173 Sum_probs=80.8
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 964664138999999999999999-9975449986889999999999999977998435322101123343210001222
Q gi|255764498|r 1 MMSSERASSINTLSAYKRDLKEMQ-NFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLR 79 (300)
Q Consensus 1 ~l~~~R~~S~~T~~~Y~~~l~~f~-~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~ 79 (300)
||...++++++|.+.|...++.++ .+++. .++.+++..++.+|++.+.+++ +++|+++.++.|+++|+||++.|++
T Consensus 16 ~l~~~~~~~~~t~~~~~~~~~~~i~~~~g~--~~i~~it~~~i~~~~~~l~~~~-~~~t~~~~~~~l~~~f~~Av~~~~i 92 (116)
T 2kj5_A 16 YFERMIAGRWKHPNIVRSRIEKDIKPAIGS--LKVEDVKPRHIDDVLKAVMKRG-APSIANDTLRWLKRMFNYAIKRHII 92 (116)
T ss_dssp HHHHHTTTSCSCHHHHHHHHHHTTSCSGGG--SBSSSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCC--CCHHHHCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999874678871999999999897998879--8678706477899988876402-3168889999999999999987895
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 2221222212122211122
Q gi|255764498|r 80 KDNPSDTLELPKKNHILPK 98 (300)
Q Consensus 80 ~~np~~~i~~~k~~~~~~~ 98 (300)
+.||+.++..++...+..+
T Consensus 93 ~~NP~~~i~~~~~~~~~~~ 111 (116)
T 2kj5_A 93 EYNPAAAFDPGDAGGKLEH 111 (116)
T ss_dssp SSCGGGGSCCCCCCCCCCS
T ss_pred CCCCCCCCCCCCCCCCCCC
T ss_conf 6797346972358973111
No 24
>>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:)
Probab=99.05 E-value=2.8e-10 Score=78.72 Aligned_cols=86 Identities=10% Similarity=0.169 Sum_probs=75.0
Q ss_pred HHCCHHHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4138999999999999999-997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 6 RASSINTLSAYKRDLKEMQ-NFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f~-~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
.++|++|++.|...++.++ .+++ +.++.+++..+++.|+..+.+. +++|+++.++.|+++|+||+..|+++.||+
T Consensus 17 ~~~~~~T~~~~~~~~~~~i~~~~g--~~~i~~it~~~i~~~~~~~~~~--s~~t~~~~~~~l~~~f~~A~~~~~i~~Np~ 92 (106)
T 2khv_A 17 SWKNTKHADQWTNTIKTYCGPVIG--PLSVQDVDTKLIMKVLDPIWEQ--KPETASRLRGRIESVLDWATVRGYREGDNP 92 (106)
T ss_dssp GGTTSTHHHHHHHHHHHHTHHHHT--TSBSSSCCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHTSSCSCCT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 479866999999999987352349--9649997679999999999963--289999999999999999999297678981
Q ss_pred CCCCCCCCCCC
Q ss_conf 22212122211
Q gi|255764498|r 85 DTLELPKKNHI 95 (300)
Q Consensus 85 ~~i~~~k~~~~ 95 (300)
.++..++...+
T Consensus 93 ~~i~~~~~~~k 103 (106)
T 2khv_A 93 ARWRGYLEHHH 103 (106)
T ss_dssp TSCSSTTTTTT
T ss_pred HHHHCCCCCCC
T ss_conf 88873020143
No 25
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:1-94)
Probab=93.25 E-value=0.12 Score=28.50 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999779984353221011233432100012222
Q gi|255764498|r 38 STNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRK 80 (300)
Q Consensus 38 ~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~ 80 (300)
..+.++.|+.++..++++++|+..+...|+.|+.|+.+.++-+
T Consensus 2 ~~~~i~~~l~~l~~~~~s~~Ti~~y~~~l~~f~~~l~~~~~~~ 44 (94)
T 2a3v_A 2 GSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSL 44 (94)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSCCGGG
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 1899999999999849899999999999999999971079444
No 26
>>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:1-114)
Probab=90.74 E-value=0.2 Score=27.13 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999997-799843532210112334321000122
Q gi|255764498|r 38 STNHLISYLNHLSQ-RKLVTSSQRRKISVIRQFYNFLCYEGL 78 (300)
Q Consensus 38 ~~~~i~~~~~~l~~-~~~s~~T~~~~~~~l~~~~~~~~~~~~ 78 (300)
+.+.+..|+.++.. ++++++|+..+...++.|+.|+...|.
T Consensus 1 ~~~~~~~fl~~~~~~~~~s~~T~~~Y~~~l~~f~~~l~~~~~ 42 (114)
T 1xo0_A 1 SDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNR 42 (114)
T ss_dssp CHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 978999999999975487999999999999999999997499
No 27
>>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:1-100)
Probab=89.44 E-value=0.41 Score=25.37 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999997-799843532210112334321000122
Q gi|255764498|r 39 TNHLISYLNHLSQ-RKLVTSSQRRKISVIRQFYNFLCYEGL 78 (300)
Q Consensus 39 ~~~i~~~~~~l~~-~~~s~~T~~~~~~~l~~~~~~~~~~~~ 78 (300)
.+.+..|+.++.. ++++++|+..+...|+.|+.|+...+.
T Consensus 3 ~~~~~~fl~~l~~~~~~s~~T~~~Y~~~l~~f~~~~~~~~~ 43 (100)
T 1a0p_A 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL 43 (100)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 79999999999998691799999999999999999987499
No 28
>>1flo_A FLP recombinase; tyrosine recombinase, protein-DNA complex, holliday- junction, domain-swapping, ligase, lyase/DNA complex; 2.65A {Saccharomyces cerevisiae} (A:151-422)
Probab=88.06 E-value=1.6 Score=21.91 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=73.2
Q ss_pred HHCCCHHHHHCCCCCCCCCCCHHHHHHHHH-----CCCC---CCCCCCCCCC---HHHH--HHHHHHHHHHHHHCCCCCC
Q ss_conf 110001221001343334320000011110-----0011---1222111110---0001--2478875323210012467
Q gi|255764498|r 130 FLLIELLYATGMRVSELVTLSAHTLNLTER-----TMII---QGKGNKERLV---ILSP--SALHALQMYKKTCSSMKMT 196 (300)
Q Consensus 130 ~~il~ll~~tGlR~~Ei~~L~~~di~~~~~-----~i~v---~~K~~k~R~i---pi~~--~~~~~l~~y~~~~~~~~~~ 196 (300)
..|+.+-+.-+||.+++.++.+.-+.+-.. .+++ .+|++++|.| |+.. +..-.|.+|+....+....
T Consensus 28 ~flll~tf~NCcR~sDLkN~DP~TFeiv~nk~lG~ilra~V~ETKTr~~R~IyFfPv~g~~DpllaL~d~l~~~~P~~Kt 107 (272)
T 1flo_A 28 QFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKR 107 (272)
T ss_dssp HHHHHHHHHHTCCHHHHHTCEEEEEEEECCTTTSCEEEEEECSCTTSCCEEEEECCCSSSCCHHHHHHHHHHHCCCEECC
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf 99999998623542324568805677765201303545765224353012589973267667234498787147388887
Q ss_pred ----C-----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHC
Q ss_conf ----7-----752001233322222111111101234420--14667642598858899999998588888--9999855
Q gi|255764498|r 197 ----G-----NDLWLFPSSTKTGHLSRQVFARDLKALAAR--AGIQKKNISPHIIRHAFASHLLEGGADLR--TIQILLG 263 (300)
Q Consensus 197 ----~-----~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~--~gi~~~~~t~H~lRht~at~l~~~G~~~~--~v~~~lG 263 (300)
. ...|-+.-.. --.+..+.+.+.... .+|... --.|--||-.+|-|-.++.+.. .+..|.+
T Consensus 108 ~srts~~~s~~q~~Qllrds-----l~~~YdrFi~k~~~~~iF~I~~G-PKSHlGRHLM~SyLs~~~l~~~~s~~GNWs~ 181 (272)
T 1flo_A 108 VNRTGNSSSNKQEYQLLKDN-----LVRSYNKALKKNAPYSIFAIKNG-PKSHIGRHLMTSFLSMKGLTELTNVVGNWSD 181 (272)
T ss_dssp CCBTTCCSCCCCCEESSCTT-----HHHHHHHHHHHHCSSGGGGSTTC-CSTTHHHHHHHHHHHHTTCTTSHHHHHTCCC
T ss_pred HHCCCCCCCCHHHHHHHHHH-----HHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHHHHHCCHHHHHHHHCCCCH
T ss_conf 50468875437889988888-----89999998731798259985379-6667788999988612156888777346420
Q ss_pred CCCHHHH-HHHHHC
Q ss_conf 8998998-999645
Q gi|255764498|r 264 HTDISTT-QIYTHL 276 (300)
Q Consensus 264 H~s~~tT-~~Y~~~ 276 (300)
-..-.+. ..|+|.
T Consensus 182 ~reS~VARs~Y~H~ 195 (272)
T 1flo_A 182 KRASAVARTTYTHQ 195 (272)
T ss_dssp C-------CCSSCC
T ss_pred HHHHHHHHHEEEEE
T ss_conf 14556643100122
No 29
>>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} (A:50-86)
Probab=83.22 E-value=0.34 Score=25.83 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1122211111000012478875
Q gi|255764498|r 163 IQGKGNKERLVILSPSALHALQ 184 (300)
Q Consensus 163 v~~K~~k~R~ipi~~~~~~~l~ 184 (300)
+.+||+|.|.|||++++.+.|.
T Consensus 11 ~~TK~kKnRtVPIS~eL~~el~ 32 (37)
T 1aih_A 11 TNTKSKKNRTVPISDELFDMLP 32 (37)
T ss_dssp ESSSSSCEEEEECCHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 1344543137766899999987
No 30
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:145-171)
Probab=81.21 E-value=0.43 Score=25.26 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=21.0
Q ss_pred HHHHHHHHCCCC-CCCCCCCCCCHHH
Q ss_conf 000111100011-1222111110000
Q gi|255764498|r 152 HTLNLTERTMII-QGKGNKERLVILS 176 (300)
Q Consensus 152 ~di~~~~~~i~v-~~K~~k~R~ipi~ 176 (300)
.|||++-+.++| .|||+|.|+|.+.
T Consensus 1 qDidfdy~~iriw~gkGgK~R~VTlA 26 (27)
T 2a3v_A 1 QDIDFDYGAIRIWQGKGGKNRTVTLA 26 (27)
T ss_dssp GGEETTTTEEEEEEETTTEEEEEECC
T ss_pred HHHHCCCCCCCCCCCCCCCCEEEECC
T ss_conf 10002345531235646775068446
No 31
>>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} (A:)
Probab=35.48 E-value=27 Score=14.81 Aligned_cols=70 Identities=16% Similarity=0.347 Sum_probs=47.1
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHH----HHHHHCCHHHHHHHH
Q ss_conf 221111111012344201466764259885889999999-858888899998558998998----999645999999999
Q gi|255764498|r 211 HLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLL-EGGADLRTIQILLGHTDISTT----QIYTHLLPDKLQKLV 285 (300)
Q Consensus 211 ~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~-~~G~~~~~v~~~lGH~s~~tT----~~Y~~~~~~~~~~~~ 285 (300)
.+|.+++.+.| ++.|.....+ ....|=..|-.++ ..+.++..|+..+|=+|.+.. .+|..+++.+.++.+
T Consensus 196 ~~S~~~l~r~f----k~~G~s~~~~-i~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~Fsr~Fkk~~G~tP~~~rk~~ 270 (276)
T 3gbg_A 196 RTNRMILKKEL----ESRGVKFREL-INSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFML 270 (276)
T ss_dssp TCCHHHHHHHH----HTTTCCHHHH-HHHHHHHHHHHHHHHTCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHHHHHT
T ss_pred CCCHHHHHHHH----HHHCCCHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 97999999999----9949989999-999999999999876999999999984999889999999998890999999745
No 32
>>2f4q_A Type I topoisomerase, putative; topoisomerase IB; 1.75A {Deinococcus radiodurans} (A:147-200)
Probab=23.20 E-value=43 Score=13.65 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHCCCC--CCCCCCCCCCHHHH-HHHHHHHH
Q ss_conf 343200000111100011--12221111100001-24788753
Q gi|255764498|r 146 LVTLSAHTLNLTERTMII--QGKGNKERLVILSP-SALHALQM 185 (300)
Q Consensus 146 i~~L~~~di~~~~~~i~v--~~K~~k~R~ipi~~-~~~~~l~~ 185 (300)
+..|+..++....+.+.. .+|+++.+.+-|.+ .+..++..
T Consensus 6 ltTLr~rHv~i~g~~i~f~f~gKsG~~~~~~i~D~~lar~v~~ 48 (54)
T 2f4q_A 6 LSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLAANXQK 48 (54)
T ss_dssp GGGCBGGGEEEETTEEEEEEECGGGCEEEEEEECHHHHHHHHH
T ss_pred EEEEEHHHEEEECCEEEEEEECCCCEEEEEEECCHHHHHHHHH
T ss_conf 3653650123508836999855873699977468899999999
No 33
>>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} (A:)
Probab=22.76 E-value=45 Score=13.49 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=27.6
Q ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 985888889999855899899899964599999999998280
Q gi|255764498|r 249 LEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHP 290 (300)
Q Consensus 249 ~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p 290 (300)
.-.|.+...|++.|| -|.+|.....+-..+.+++.+++.++
T Consensus 28 ~~~~~s~~eIA~~l~-is~~tV~~~l~ra~~~Lr~~l~~~~~ 68 (70)
T 2o8x_A 28 QLLGLSYADAAAVCG-CPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HTSCCCHHHHHHHHT-SCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 995847999999979-89999999999999999998736179
Done!