HHsearch results for GI: 255764498 and protein with PDBid: 1aih_A
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.97 E-value=3.6e-32 Score=205.12 Aligned_cols=167 Identities=28% Similarity=0.410 Sum_probs=127.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 12233202469999864320012561027765431100012210013433343200000111100011122211111000
Q gi|255764498|r 96 LPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVIL 175 (300)
Q Consensus 96 ~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi 175 (300)
...+|++||+.+|++++..... .+.++++.+++.||||++|+++|+|+||+++...+. .+|++++|.|||
T Consensus 3 ~~~~Ls~eEi~~ll~~~~~~~~---------~~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~~-~~K~~~~r~vpl 72 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRN---------PDLGLIVRICLATGARWSEAETLTQSQVMPYKITFT-NTKSKKNRTVPI 72 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSS---------TTHHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEE-SSSSSCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEE-ECCCCCEEEECC
T ss_conf 3468999999999998656589---------779999999999785699998586410466512566-325662036264
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 01247887532321001246777520012333222221111111012344201466764259885889999999858888
Q gi|255764498|r 176 SPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADL 255 (300)
Q Consensus 176 ~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~ 255 (300)
++.+.++|..+. .++|.... ..+...+ .....++. +.+++|+|||||||.++++|+|+
T Consensus 73 ~~~~~~~l~~~~------------~~~~~~~~-------~~~~~~~--~~~~~~~~-~~~~~H~lRht~at~l~~~g~~~ 130 (170)
T 1aih_A 73 SDELFDMLPKKR------------GRLFNDAY-------ESFENAV--LRAEIELP-KGQLTHVLRHTFASHFMMNGGNI 130 (170)
T ss_dssp CHHHHHHSCCCS------------SBSSCCCH-------HHHHHHH--HHTTCCCC-TTCTTTHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHC------------CCCCCCCH-------HHHHHHH--HHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 799999999842------------77666204-------6789999--88862368-76321301648999999869979
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCC
Q ss_conf 8999985589989989996459999999999828011100
Q gi|255764498|r 256 RTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKE 295 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~ 295 (300)
..||.+|||+|++||++|+|++.+.+++++ ++||++.+-
T Consensus 131 ~~i~~~lGH~s~~~t~~Y~~~~~~~~~~~~-~~~p~~~~~ 169 (170)
T 1aih_A 131 LVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNPLSNPA 169 (170)
T ss_dssp HHHHHHHTCSSHHHHGGGGGGSCCCTTHHH-HHSTTTSCC
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-HHCCCCCCC
T ss_conf 999998389989999998877999999999-858676889