HHsearch results for GI: 255764498 and protein with PDBid: 1aih_A

>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.97  E-value=3.6e-32  Score=205.12  Aligned_cols=167  Identities=28%  Similarity=0.410  Sum_probs=127.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf             12233202469999864320012561027765431100012210013433343200000111100011122211111000
Q gi|255764498|r   96 LPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVIL  175 (300)
Q Consensus        96 ~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi  175 (300)
                      ...+|++||+.+|++++.....         .+.++++.+++.||||++|+++|+|+||+++...+. .+|++++|.|||
T Consensus         3 ~~~~Ls~eEi~~ll~~~~~~~~---------~~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~~-~~K~~~~r~vpl   72 (170)
T 1aih_A            3 ELAFLYERDIYRLLAECDNSRN---------PDLGLIVRICLATGARWSEAETLTQSQVMPYKITFT-NTKSKKNRTVPI   72 (170)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSSS---------TTHHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEE-SSSSSCEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEE-ECCCCCEEEECC
T ss_conf             3468999999999998656589---------779999999999785699998586410466512566-325662036264


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             01247887532321001246777520012333222221111111012344201466764259885889999999858888
Q gi|255764498|r  176 SPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADL  255 (300)
Q Consensus       176 ~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~  255 (300)
                      ++.+.++|..+.            .++|....       ..+...+  .....++. +.+++|+|||||||.++++|+|+
T Consensus        73 ~~~~~~~l~~~~------------~~~~~~~~-------~~~~~~~--~~~~~~~~-~~~~~H~lRht~at~l~~~g~~~  130 (170)
T 1aih_A           73 SDELFDMLPKKR------------GRLFNDAY-------ESFENAV--LRAEIELP-KGQLTHVLRHTFASHFMMNGGNI  130 (170)
T ss_dssp             CHHHHHHSCCCS------------SBSSCCCH-------HHHHHHH--HHTTCCCC-TTCTTTHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHC------------CCCCCCCH-------HHHHHHH--HHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCH
T ss_conf             799999999842------------77666204-------6789999--88862368-76321301648999999869979


Q ss_pred             HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCC
Q ss_conf             8999985589989989996459999999999828011100
Q gi|255764498|r  256 RTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKE  295 (300)
Q Consensus       256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~  295 (300)
                      ..||.+|||+|++||++|+|++.+.+++++ ++||++.+-
T Consensus       131 ~~i~~~lGH~s~~~t~~Y~~~~~~~~~~~~-~~~p~~~~~  169 (170)
T 1aih_A          131 LVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNPLSNPA  169 (170)
T ss_dssp             HHHHHHHTCSSHHHHGGGGGGSCCCTTHHH-HHSTTTSCC
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-HHCCCCCCC
T ss_conf             999998389989999998877999999999-858676889