HHsearch results for GI: 255764498 and protein with PDBid: 2khq_A

>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.14  E-value=1e-10  Score=80.33  Aligned_cols=83  Identities=20%  Similarity=0.217  Sum_probs=75.3

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             41389999999999999999975449986889999999999999977998435322101123343210001222222122
Q gi|255764498|r    6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSD   85 (300)
Q Consensus         6 R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~   85 (300)
                      .+++++|+..|...++.+..+++  +..+.+++..++++|+..+.+ +.+++|+++.++.|+++|+||+..|++..||+.
T Consensus        18 ~~~~~~T~~~y~~~~~~i~~~~g--~~~l~~it~~~i~~~~~~l~~-~~s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~   94 (110)
T 2khq_A           18 PHVSESTKRHYESAYKHIKDHFR--HKLLKDIKRTEYQKFLNEYGL-THSYETIRKLNSYIRNAFDDAIHEGYVIKNPTY   94 (110)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHCS--SCBGGGCCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHTTCCCCCGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             77899999999999999999967--460400789999999999986-412899999999999999999988791019876


Q ss_pred             CCCCCC
Q ss_conf             221212
Q gi|255764498|r   86 TLELPK   91 (300)
Q Consensus        86 ~i~~~k   91 (300)
                      +++.+.
T Consensus        95 ~vkl~~  100 (110)
T 2khq_A           95 KAELHA  100 (110)
T ss_dssp             GCCCCC
T ss_pred             CCEECC
T ss_conf             877572