HHsearch results for GI: 255764498 and protein with PDBid: 3lys_A
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=99.16 E-value=6.2e-11 Score=81.61 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=76.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
+.+++++|...|+..++.+..+++ +.++.++++.++++|+..+. ++.+++|+++..+.|+++|+||+..|+++.||+
T Consensus 21 ~~~~~~~T~~~y~~~~~~i~~~~g--~~~l~~It~~~i~~~~~~l~-~~~s~~tv~~~~~~l~~~~~~Av~~g~I~~NP~ 97 (112)
T 3lys_A 21 KNAIDEMTYKGYEQTLKYLKTYMP--NVLISEITASSYQRALNKFA-ETHAKASTKGFHTRVRASIQCLIEEGRLQKDFT 97 (112)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSS--SCBTTTCCHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 288999999999999999999988--08020079999999999732-464268999999999999999998869030888
Q ss_pred CCCCCCCCC
Q ss_conf 222121222
Q gi|255764498|r 85 DTLELPKKN 93 (300)
Q Consensus 85 ~~i~~~k~~ 93 (300)
.++.++..+
T Consensus 98 ~~v~i~G~e 106 (112)
T 3lys_A 98 TRAVVKGLE 106 (112)
T ss_dssp SSTTCCCCC
T ss_pred CCCEECCEE
T ss_conf 888767301