HHsearch results for GI: 255764498 and protein with PDBid: 3nkh_A
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.8e-34 Score=216.63 Aligned_cols=203 Identities=22% Similarity=0.335 Sum_probs=156.6
Q ss_pred CCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22221212221--112233202469999864320012561--02776543110001221001343334320000011110
Q gi|255764498|r 84 SDTLELPKKNH--ILPKTLHKDTIANLLEQAKIEAENPAP--GQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER 159 (300)
Q Consensus 84 ~~~i~~~k~~~--~~~~~ls~~e~~~ll~~~~~~~~~~~~--~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~ 159 (300)
+.+|+....+. ....+++.+|+..+++.+......... ......+..+++.++++||||+||+++|+|+|||++++
T Consensus 8 ~~~vd~~~~~~~~~~~~~l~~~Ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~TG~R~~El~~L~~~did~e~~ 87 (244)
T 3nkh_A 8 SSGVDLGTENLYFQSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNK 87 (244)
T ss_dssp -------------CCSCCCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHTCBGGGEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCC
T ss_conf 56761577521001589999999999999987632012321146679999999999998393689995191352166556
Q ss_pred CCCCCCC-------------------CCCCCCCHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0011122-------------------211111000012478875323210012----46777520012333222221111
Q gi|255764498|r 160 TMIIQGK-------------------GNKERLVILSPSALHALQMYKKTCSSM----KMTGNDLWLFPSSTKTGHLSRQV 216 (300)
Q Consensus 160 ~i~v~~K-------------------~~k~R~ipi~~~~~~~l~~y~~~~~~~----~~~~~~~~lf~~~~~~~~~s~~~ 216 (300)
++.|.++ .++.|.|||++.+.++|.+|+...... .......++|++. .|.|++..+
T Consensus 88 ~i~v~~~~~~~~~~~~~~~~~~~~k~~~~~R~i~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~f~~~-~g~~~s~~~ 166 (244)
T 3nkh_A 88 SLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNH-KGNPMQTER 166 (244)
T ss_dssp EEEECCEEEEEECTTSCEEEEECC---CCCEEEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCT-TSSBCCHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC-CCCCCCCHH
T ss_conf 2578324101010367742134556778506883208887889999998654320355678765412203-797232001
Q ss_pred CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHCCHHHHHHHHHHH
Q ss_conf 111012344201466764259885889999999858888899998558998998-999645999999999982
Q gi|255764498|r 217 FARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTT-QIYTHLLPDKLQKLVQDY 288 (300)
Q Consensus 217 ~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT-~~Y~~~~~~~~~~~~~~~ 288 (300)
+++.++++++.+|++ ++++||+|||||||.++++|+|+..|+.+|||+|++|| ++|+|++++..++++++.
T Consensus 167 ~~~~~~~~~~~~gi~-~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~ki 238 (244)
T 3nkh_A 167 FNKILREAAKDVGID-KEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKL 238 (244)
T ss_dssp HHHHHHHHHHHTTCC-SCCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 001577899981887-546763348999999998699999999983899889999984467999999999998