Query gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 300
No_of_seqs 163 out of 12975
Neff 9.6
Searched_HMMs 23785
Date Tue May 31 20:13:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764498.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a0p_A Site-specific recombina 100.0 0 0 325.4 9.2 276 2-285 13-289 (290)
2 2a3v_A Site-specific recombina 100.0 0 0 285.0 11.2 264 5-287 15-316 (320)
3 1xo0_A Recombinase CRE; CRE re 100.0 1.5E-42 0 265.4 11.4 276 2-284 12-316 (324)
4 1z1b_A Integrase; protein-DNA 100.0 1.1E-41 0 260.5 12.2 255 5-276 89-345 (356)
5 1z19_A Integrase; protein-DNA 100.0 1E-40 4.2E-45 254.9 9.8 251 4-275 15-271 (283)
6 3nkh_A Integrase; alpha-fold, 100.0 3.8E-34 1.6E-38 216.6 11.2 203 84-288 8-238 (244)
7 1aih_A HP1 integrase; DNA inte 100.0 3.6E-32 1.5E-36 205.1 5.1 167 96-295 3-169 (170)
8 1ae9_A Lambda integrase; DNA r 99.9 2.5E-24 1E-28 159.5 2.3 168 98-278 2-171 (179)
9 3nrw_A Phage integrase/site-sp 99.6 5.5E-16 2.3E-20 111.0 7.9 93 2-94 17-111 (117)
10 2oxo_A Integrase; DNA-binding 99.3 4.6E-12 1.9E-16 88.2 7.6 86 5-93 16-101 (103)
11 2key_A Putative phage integras 99.3 1E-12 4.2E-17 92.0 4.2 84 5-90 22-106 (112)
12 2kd1_A DNA integration/recombi 99.2 1.7E-11 7E-16 84.9 6.5 89 6-95 21-109 (118)
13 2kiw_A INT protein; alpha, str 99.2 6.2E-11 2.6E-15 81.6 8.0 88 6-96 15-102 (111)
14 2kkp_A Phage integrase; SAM-li 99.2 5.3E-12 2.2E-16 87.8 2.4 89 6-95 23-111 (117)
15 3lys_A Prophage PI2 protein 01 99.2 6.2E-11 2.6E-15 81.6 7.0 86 5-93 21-106 (112)
16 2khq_A Integrase; all-alpha, s 99.1 1E-10 4.3E-15 80.3 7.5 83 6-91 18-100 (110)
17 2kob_A Uncharacterized protein 99.1 1.6E-10 6.7E-15 79.2 7.1 84 6-94 18-101 (108)
18 2kj9_A Integrase; DNA_BRE_C su 98.5 1.1E-07 4.7E-12 62.7 4.2 82 5-89 24-106 (118)
19 2kkv_A Integrase; protein stru 98.4 1.1E-07 4.8E-12 62.6 4.0 83 3-88 18-101 (121)
20 2kj8_A Putative prophage CPS-5 98.4 6.6E-07 2.8E-11 58.2 6.5 80 6-88 20-100 (118)
21 2kj5_A Phage integrase; GFT NM 98.2 3E-07 1.2E-11 60.2 2.0 83 10-95 25-108 (116)
22 3m4a_A Putative type I topoiso 97.8 6.8E-05 2.9E-09 46.5 7.6 132 130-275 125-291 (346)
23 2khv_A Phage integrase; soluti 97.5 8E-05 3.3E-09 46.1 4.5 74 8-85 19-94 (106)
24 2v6e_A Protelemorase; hairpin 97.4 8.2E-05 3.5E-09 46.0 3.5 138 132-275 285-447 (558)
25 2h7g_X DNA topoisomerase 1; ty 97.1 0.0017 7.4E-08 38.3 7.2 124 130-275 118-276 (314)
26 2b9s_A Topoisomerase I-like pr 96.2 0.016 6.8E-07 32.6 7.0 102 130-250 278-395 (432)
27 1a31_A Protein (topoisomerase 93.8 0.15 6.2E-06 27.1 6.3 117 131-266 303-460 (591)
28 1a0p_A Site-specific recombina 90.7 0.15 6.3E-06 27.0 3.1 39 39-77 3-42 (290)
29 3nrw_A Phage integrase/site-sp 89.4 0.29 1.2E-05 25.3 3.7 42 36-78 6-48 (117)
30 1flo_A FLP recombinase; tyrosi 88.3 1.1 4.6E-05 22.0 6.3 142 129-276 177-345 (422)
31 1bl0_A Protein (multiple antib 69.7 4.5 0.00019 18.4 3.9 70 210-283 37-111 (129)
32 3mkl_A HTH-type transcriptiona 58.3 8.1 0.00034 17.0 5.6 72 210-286 33-109 (120)
33 1dzf_A DNA-directed RNA polyme 56.1 8.8 0.00037 16.7 4.0 24 10-34 7-30 (215)
34 2k9s_A Arabinose operon regula 42.6 15 0.00061 15.5 5.7 70 211-284 31-105 (107)
35 3lsg_A Two-component response 36.3 18 0.00077 14.9 5.0 68 211-282 30-102 (103)
36 3oou_A LIN2118 protein; protei 26.9 26 0.0011 14.0 5.6 71 211-285 32-107 (108)
37 1jko_C HIN recombinase, DNA-in 20.9 35 0.0015 13.3 3.7 39 233-274 4-42 (52)
No 1
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=100.00 E-value=0 Score=325.35 Aligned_cols=276 Identities=39% Similarity=0.594 Sum_probs=223.0
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD 81 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~ 81 (300)
|..|||+|++|+++|+.+|+.|..||+.+++++.+++..++.+|+.++.+++.+++|++++++.|++||+|+.+.+++..
T Consensus 13 l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~l~~l~~~~~~~~~~~~~~~ 92 (290)
T 1a0p_A 13 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFRED 92 (290)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99986908999999999999999999885999376999999999999987799889999999999999999998243346
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 21222212122211122332024699998643200125610277654311000122100134333432000001111000
Q gi|255764498|r 82 NPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTM 161 (300)
Q Consensus 82 np~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i 161 (300)
+|+..+..++..+.........+....+... ........++++++.+++.||||++|+++|+|+|||++++.+
T Consensus 93 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~did~~~~~i 165 (290)
T 1a0p_A 93 DPSAHLASPKLPQRLPKDLSEAQVERLLQAP-------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 165 (290)
T ss_dssp CTTSCC----------CCCCHHHHHHHHHCS-------CTTSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEE
T ss_pred CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEE
T ss_conf 8176503777666676510089999987521-------001341189999999999958778999809499957579989
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 111222111110000124788753232100124-6777520012333222221111111012344201466764259885
Q gi|255764498|r 162 IIQGKGNKERLVILSPSALHALQMYKKTCSSMK-MTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII 240 (300)
Q Consensus 162 ~v~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~-~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~l 240 (300)
.+.+|++++|.+|+.+.....+..+........ ......++++. .++.......+...++.+...+|+..++++||+|
T Consensus 166 ~~~~K~~k~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~l 244 (290)
T 1a0p_A 166 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPS-QRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 244 (290)
T ss_dssp EEECSSSCEEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBC-TTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred EECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 866889940141132777778999998500111013445554533-3566542378999999999994578999874517
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 889999999858888899998558998998999645999999999
Q gi|255764498|r 241 RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLV 285 (300)
Q Consensus 241 Rht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~ 285 (300)
||||||.++++|+|+..||++|||+|++||++|+|++.+.+++++
T Consensus 245 Rht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~~~lr~~~ 289 (290)
T 1a0p_A 245 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 289 (290)
T ss_dssp HHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 799999999878999999988189988999999878999999862
No 2
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00 E-value=0 Score=285.04 Aligned_cols=264 Identities=30% Similarity=0.442 Sum_probs=207.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6413899999999999999999754499868899999999999999779-984353221011233432100012222221
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRK-LVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~-~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300)
.|++|++|+++|..++++|+.|++.. .+.+++..++.+|+.++..++ .++++.+..+++++.++.++...+....++
T Consensus 15 ~r~~s~~T~~~Y~~~l~~f~~~~~~~--~~~~i~~~~i~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (320)
T 2a3v_A 15 TRYYAKKTIEAYLHWITRYIHFHNKK--HPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIR 92 (320)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTTSSSC--CGGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTSSCCCCTTCC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCC--CHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 85968999999999999999997227--9323999999999999998489569999999999999998866403573356
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 22221212221112233202469999864320012561027765431100012210013433343200000111100011
Q gi|255764498|r 84 SDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMII 163 (300)
Q Consensus 84 ~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v 163 (300)
+..++.++..|++++.+|+..+.... ..++++++.+++.||+|.+|+++|+|+|++++.+.+.+
T Consensus 93 ---~~~~k~~k~~~~~l~~~e~~~~~~~~-------------~~~~~~~~~ll~~tG~R~~E~~~l~~~d~~~~~~~i~~ 156 (320)
T 2a3v_A 93 ---FQRSQLERKLPVVLTRDEIRRLLEIV-------------DPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRI 156 (320)
T ss_dssp ---CCCCCCCCCCCCCCCHHHHHHHTTSS-------------CHHHHHHHHHHHHSCCCHHHHHTCBGGGEETTTTEEEE
T ss_pred ---CCCCCCCCCCCCCCCHHHHHHHHHCC-------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf ---76678788899767899999998556-------------81789999999982873788888787751033323036
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHHCCC------CCCC--------------------CCCCCCCCC----------
Q ss_conf -122211111000012478875323210012------4677--------------------752001233----------
Q gi|255764498|r 164 -QGKGNKERLVILSPSALHALQMYKKTCSSM------KMTG--------------------NDLWLFPSS---------- 206 (300)
Q Consensus 164 -~~K~~k~R~ipi~~~~~~~l~~y~~~~~~~------~~~~--------------------~~~~lf~~~---------- 206 (300)
.+|+++.|.+|+++.+.+.+.+|+...... .... ...++|...
T Consensus 157 ~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (320)
T 2a3v_A 157 WQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDV 236 (320)
T ss_dssp EEETTTEEEEEECCGGGHHHHHHHHHHHHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGCGGGSBSSBCSSCEEETTTTE
T ss_pred EECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCEECCCCCCCCCCCCCC
T ss_conf 63678701387265999999999999856543223321134421203777664535301013310024555555543233
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 32222211111110123442014667642598858899999998588888999985589989989996459999999999
Q gi|255764498|r 207 TKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQ 286 (300)
Q Consensus 207 ~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~ 286 (300)
..+.+++...++..++++++.+|++. ++|||+|||||||.|+++|+|+..||++|||+|++||++|+|+.++.++++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~gl~~-~~s~H~lRHtfaT~ll~~g~~l~~vq~~lGHss~~tT~~Y~hl~~~~~~~~~~ 315 (320)
T 2a3v_A 237 MRRHHMNETVLQKAVRRSAQEAGIEK-TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLS 315 (320)
T ss_dssp EECCBCCHHHHHHHHHHHHHTTCCCS-CCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGCC------CCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 23564658999999999999859999-98887778999999998789999999883899889999998279978999971
Q ss_pred H
Q ss_conf 8
Q gi|255764498|r 287 D 287 (300)
Q Consensus 287 ~ 287 (300)
.
T Consensus 316 ~ 316 (320)
T 2a3v_A 316 P 316 (320)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 3
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=100.00 E-value=1.5e-42 Score=265.41 Aligned_cols=276 Identities=13% Similarity=0.134 Sum_probs=204.9
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 64664138999999999999999997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD 81 (300)
Q Consensus 2 l~~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~ 81 (300)
|+.++++|+||+++|...++.|..||...++++.++++.++.+|+.++.++|++++|+++++++|+.|++|+...+.+..
T Consensus 12 ~~~~~~~s~~T~~~y~~~~~~f~~f~~~~~~~~~~it~~~v~~y~~~l~~~g~s~~Ti~~~l~~l~~~~~~~~~~~~~~~ 91 (324)
T 1xo0_A 12 FRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDS 91 (324)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTSCCGGGS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99864859999999999999999999973989567999999999999987799989999999998877899874264446
Q ss_pred CCCCCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHH
Q ss_conf 2122221212--------22111223320246999986432001256102776543110001221001343334320000
Q gi|255764498|r 82 NPSDTLELPK--------KNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHT 153 (300)
Q Consensus 82 np~~~i~~~k--------~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~d 153 (300)
+|......+. .....+..++.++...+..... ........|+.+++.+++.+|+|.+|++.+.+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~~~~~~~~~~~~~r~~e~~~~~~~d 165 (324)
T 1xo0_A 92 NAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLME------NSDRCQDIRNLAFLGIAYNTLLKIAEIARIRVKD 165 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHS------SCCCHHHHHHHHHHHHHHHHCCCHHHHHHCBGGG
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 3365530100001455332333577688999999998664------5340778999999998765557289886411210
Q ss_pred HHHHHHCCCC----CCC---CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCCCCCCCCCCCCCC--
Q ss_conf 0111100011----122---2111110000124788753232100124677752-------00123332222211111--
Q gi|255764498|r 154 LNLTERTMII----QGK---GNKERLVILSPSALHALQMYKKTCSSMKMTGNDL-------WLFPSSTKTGHLSRQVF-- 217 (300)
Q Consensus 154 i~~~~~~i~v----~~K---~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~-------~lf~~~~~~~~~s~~~~-- 217 (300)
+++.+....+ .+| ..+.|.+|+++.+.+++..|.............. .+|.. ..+.+++...+
T Consensus 166 ~~~~~~~~~~~~~~~~k~~~~~~~r~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 244 (324)
T 1xo0_A 166 ISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAP-SATSQLSTRALEG 244 (324)
T ss_dssp EEEEETTEEEEEECCCCSSSSCSCEEEEECHHHHHHHHHHHHHHCGGGSTTSBSSCEECTTSCEEC-CSSCCCCHHHHHH
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCC-CCCCCCCCCHHHH
T ss_conf 001567630001234433323663022004779999999998602234543200101466766566-4456666402556
Q ss_pred -----CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf -----1101234420146676425988588999999985888889999855899899899964599999999
Q gi|255764498|r 218 -----ARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKL 284 (300)
Q Consensus 218 -----~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~ 284 (300)
...++..+..+|+....++||+|||||||.|+++|+|+..||++|||+|++||++|++..++...++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~s~H~lRHt~at~l~~~G~~~~~v~~~lGH~s~~tt~~Y~~~~~~~~~~~ 316 (324)
T 1xo0_A 245 IFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAM 316 (324)
T ss_dssp HHHHHHHHHHCSCCCSCCSCSSCCTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSSSSHHHHSTTSGGGCCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 778888999999886178888778863199999999987899999998828998899999835646889999
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=100.00 E-value=1.1e-41 Score=260.52 Aligned_cols=255 Identities=19% Similarity=0.139 Sum_probs=198.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
.++++++|...|...++.|..|++ +.++.+++..++.+|+.++.+++ +++|+++.++.|+++|+||+..+++..||+
T Consensus 89 ~~~~~~~T~~~y~~~~~~l~~~~g--~~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~~~l~~~~~~a~~~~~~~~np~ 165 (356)
T 1z1b_A 89 SRGIKQKTLINYMSKIKAIRRGLP--DAPLEDITTKEIAAMLNGYIDEG-KAASAKLIRSTLSDAFREAIAEGHITTNHV 165 (356)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHSC--SCBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 659999999999999999999976--99968789999999999999849-999999999999999999998512124815
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 22212122211122332024699998643200125610277654311000122100134333432000001111000111
Q gi|255764498|r 85 DTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQ 164 (300)
Q Consensus 85 ~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~ 164 (300)
..+..++... ....++.+|+.++++.+.... . ...+++.|++.||||++|+++|+|+||+.+...+ ..
T Consensus 166 ~~~~~~~~~~-~~~~lt~~E~~~l~~~~~~~~------~----~~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~i-~~ 233 (356)
T 1z1b_A 166 AATRAAKSKV-RRSRLTADEYLKIYQAAESSP------C----WLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYV-EQ 233 (356)
T ss_dssp TTSCCCCCCC-CBCCCCHHHHHHHHHHTTSSC------H----HHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEE-EC
T ss_pred HHHHCCCCCC-CCCCCCHHHHHHHHHCCCCCC------H----HHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCEEE-EE
T ss_conf 4320122357-787689899878752012476------5----7899999999968785457509299922464599-98
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC--CCCCHHHHHH
Q ss_conf 22211111000012478875323210012467775200123332222211111110123442014667--6425988588
Q gi|255764498|r 165 GKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK--KNISPHIIRH 242 (300)
Q Consensus 165 ~K~~k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~--~~~t~H~lRh 242 (300)
+|+++.+.+|+++.+..++..+.+..........+.++|+. ..|.+++..+++..|+++++.+|+.. ..+++|+|||
T Consensus 234 ~K~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~H~lRh 312 (356)
T 1z1b_A 234 SKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIAS-TRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRS 312 (356)
T ss_dssp TTTCCEEEEETTCEETTTTEEHHHHHHHHHHHTCSSBSSCC-TTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 88884246027187899999999999864401577650011-34666777899999999999859998889997586899
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 9999999858888899998558998998999645
Q gi|255764498|r 243 AFASHLLEGGADLRTIQILLGHTDISTTQIYTHL 276 (300)
Q Consensus 243 t~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~~ 276 (300)
+ ||.++++|+|+..|+.+|||+|++||++|.+.
T Consensus 313 ~-a~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~ 345 (356)
T 1z1b_A 313 L-SARLYEKQISDKFAQHLLGHKSDTMASQYRDD 345 (356)
T ss_dssp H-HHHHHHHHTCHHHHHHHHTCSSHHHHHHHTCC
T ss_pred H-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 9-99999869999999988189998999988047
No 5
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=100.00 E-value=1e-40 Score=254.85 Aligned_cols=251 Identities=18% Similarity=0.178 Sum_probs=194.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 66413899999999999999999754499868899999999999999779984353221011233432100012222221
Q gi|255764498|r 4 SERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300)
Q Consensus 4 ~~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300)
..+++|++|+++|...++.|..|+++ .++.+++..++.+|+.++.+++ +++|+++.++.|++||+||++.|+++.||
T Consensus 15 ~~~~l~~~T~~~y~~~l~~~~~~~g~--~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~~~l~~~~~~a~~~~~i~~np 91 (283)
T 1z19_A 15 ASRGIKQKTLINYMSKIKAIRRGLPD--APLEDITTKEIAAMLNGYIDEG-KAASAKLIRSTLSDAFREAIAEGHITTNH 91 (283)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHSCS--CBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTTSCSCCT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCC--CCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 87699999999999999999999769--9968799999999999999858-99999999999999999999859865481
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 22221212221112233202469999864320012561027765431100012210013433343200000111100011
Q gi|255764498|r 84 SDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMII 163 (300)
Q Consensus 84 ~~~i~~~k~~~~~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v 163 (300)
+..++.++... ..++++.+|+.++++.+.... . ...+++.+++.||||++|+++|+|+||+. +.+.|
T Consensus 92 ~~~~~~~~~~~-~~~~lt~~e~~~i~~~~~~~~------~----~~~~~~~l~~~tG~R~~Ei~~L~~~di~~--~~~~i 158 (283)
T 1z19_A 92 VAATRAAKSKV-RRSRLTADEYLKIYQAAESSP------C----WLRLAMELAVVTGQRVGDLCEMKWSDIVD--GYLYV 158 (283)
T ss_dssp TTTSCCCCCCC-CCCCCCHHHHHHHHHHGGGSC------H----HHHHHHHHHHHSCCCHHHHTTCBGGGEET--TEEEE
T ss_pred HHHCCCCCCCC-CCCCCCHHHHHHHHHHHHCCC------H----HHHHHHHHHHHHCCCHHHHHCCCHHHHCC--CEEEE
T ss_conf 76500553477-777688999999999871488------8----99999999999787865575192999218--80499
Q ss_pred -CCCCCCCCCCHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC--CCCCH
Q ss_conf -1222111110000124788---75323210012467775200123332222211111110123442014667--64259
Q gi|255764498|r 164 -QGKGNKERLVILSPSALHA---LQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQK--KNISP 237 (300)
Q Consensus 164 -~~K~~k~R~ipi~~~~~~~---l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~--~~~t~ 237 (300)
..|+++.+.+|++.....+ +.+++...... ....++|+. ..+++++..++...++++++.+|+.. ..+++
T Consensus 159 ~~~K~~~~~~~p~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (283)
T 1z19_A 159 EQSKTGVKIAIPTALHIDALGISMKETLDKCKEI---LGGETIIAS-TRREPLSSGTVSRYFMRARKASGLSFEGDPPTF 234 (283)
T ss_dssp ECTTTCCEEEEETTCEETTTTEEHHHHHHHHHHH---HCSSBSSCC-TTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCG
T ss_pred EECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCCCEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8668884246107387899999888888753035---777402320-132446715799999999998088767999972
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 88588999999985888889999855899899899964
Q gi|255764498|r 238 HIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTH 275 (300)
Q Consensus 238 H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~~ 275 (300)
|+|||++ |.++++|+|+..||++|||+|++||++|.+
T Consensus 235 H~lR~~~-~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~ 271 (283)
T 1z19_A 235 HELRSLS-ARLYEKQISDKFAQHLLGHKSDTMASQYRD 271 (283)
T ss_dssp GGHHHHH-HHHHHHHTCHHHHHHHHTCSSSCC------
T ss_pred CHHHHHH-HHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8599999-999986989999999838998899999842
No 6
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.8e-34 Score=216.63 Aligned_cols=203 Identities=22% Similarity=0.335 Sum_probs=156.6
Q ss_pred CCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22221212221--112233202469999864320012561--02776543110001221001343334320000011110
Q gi|255764498|r 84 SDTLELPKKNH--ILPKTLHKDTIANLLEQAKIEAENPAP--GQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTER 159 (300)
Q Consensus 84 ~~~i~~~k~~~--~~~~~ls~~e~~~ll~~~~~~~~~~~~--~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~ 159 (300)
+.+|+....+. ....+++.+|+..+++.+......... ......+..+++.++++||||+||+++|+|+|||++++
T Consensus 8 ~~~vd~~~~~~~~~~~~~l~~~Ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~TG~R~~El~~L~~~did~e~~ 87 (244)
T 3nkh_A 8 SSGVDLGTENLYFQSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNK 87 (244)
T ss_dssp -------------CCSCCCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHTCBGGGEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCC
T ss_conf 56761577521001589999999999999987632012321146679999999999998393689995191352166556
Q ss_pred CCCCCCC-------------------CCCCCCCHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0011122-------------------211111000012478875323210012----46777520012333222221111
Q gi|255764498|r 160 TMIIQGK-------------------GNKERLVILSPSALHALQMYKKTCSSM----KMTGNDLWLFPSSTKTGHLSRQV 216 (300)
Q Consensus 160 ~i~v~~K-------------------~~k~R~ipi~~~~~~~l~~y~~~~~~~----~~~~~~~~lf~~~~~~~~~s~~~ 216 (300)
++.|.++ .++.|.|||++.+.++|.+|+...... .......++|++. .|.|++..+
T Consensus 88 ~i~v~~~~~~~~~~~~~~~~~~~~k~~~~~R~i~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~f~~~-~g~~~s~~~ 166 (244)
T 3nkh_A 88 SLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNH-KGNPMQTER 166 (244)
T ss_dssp EEEECCEEEEEECTTSCEEEEECC---CCCEEEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCT-TSSBCCHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC-CCCCCCCHH
T ss_conf 2578324101010367742134556778506883208887889999998654320355678765412203-797232001
Q ss_pred CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHCCHHHHHHHHHHH
Q ss_conf 111012344201466764259885889999999858888899998558998998-999645999999999982
Q gi|255764498|r 217 FARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTT-QIYTHLLPDKLQKLVQDY 288 (300)
Q Consensus 217 ~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT-~~Y~~~~~~~~~~~~~~~ 288 (300)
+++.++++++.+|++ ++++||+|||||||.++++|+|+..|+.+|||+|++|| ++|+|++++..++++++.
T Consensus 167 ~~~~~~~~~~~~gi~-~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~ki 238 (244)
T 3nkh_A 167 FNKILREAAKDVGID-KEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKL 238 (244)
T ss_dssp HHHHHHHHHHHTTCC-SCCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 001577899981887-546763348999999998699999999983899889999984467999999999998
No 7
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.97 E-value=3.6e-32 Score=205.12 Aligned_cols=167 Identities=28% Similarity=0.410 Sum_probs=127.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 12233202469999864320012561027765431100012210013433343200000111100011122211111000
Q gi|255764498|r 96 LPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVIL 175 (300)
Q Consensus 96 ~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi 175 (300)
...+|++||+.+|++++..... .+.++++.+++.||||++|+++|+|+||+++...+. .+|++++|.|||
T Consensus 3 ~~~~Ls~eEi~~ll~~~~~~~~---------~~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~~-~~K~~~~r~vpl 72 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRN---------PDLGLIVRICLATGARWSEAETLTQSQVMPYKITFT-NTKSKKNRTVPI 72 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSS---------TTHHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEE-SSSSSCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEE-ECCCCCEEEECC
T ss_conf 3468999999999998656589---------779999999999785699998586410466512566-325662036264
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 01247887532321001246777520012333222221111111012344201466764259885889999999858888
Q gi|255764498|r 176 SPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADL 255 (300)
Q Consensus 176 ~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~ 255 (300)
++.+.++|..+. .++|.... ..+...+ .....++. +.+++|+|||||||.++++|+|+
T Consensus 73 ~~~~~~~l~~~~------------~~~~~~~~-------~~~~~~~--~~~~~~~~-~~~~~H~lRht~at~l~~~g~~~ 130 (170)
T 1aih_A 73 SDELFDMLPKKR------------GRLFNDAY-------ESFENAV--LRAEIELP-KGQLTHVLRHTFASHFMMNGGNI 130 (170)
T ss_dssp CHHHHHHSCCCS------------SBSSCCCH-------HHHHHHH--HHTTCCCC-TTCTTTHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHC------------CCCCCCCH-------HHHHHHH--HHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 799999999842------------77666204-------6789999--88862368-76321301648999999869979
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHCC
Q ss_conf 8999985589989989996459999999999828011100
Q gi|255764498|r 256 RTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKE 295 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~~ 295 (300)
..||.+|||+|++||++|+|++.+.+++++ ++||++.+-
T Consensus 131 ~~i~~~lGH~s~~~t~~Y~~~~~~~~~~~~-~~~p~~~~~ 169 (170)
T 1aih_A 131 LVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNPLSNPA 169 (170)
T ss_dssp HHHHHHHTCSSHHHHGGGGGGSCCCTTHHH-HHSTTTSCC
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-HHCCCCCCC
T ss_conf 999998389989999998877999999999-858676889
No 8
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=99.88 E-value=2.5e-24 Score=159.55 Aligned_cols=168 Identities=19% Similarity=0.108 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 23320246999986432001256102776543110001221001343334320000011110001112221111100001
Q gi|255764498|r 98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSP 177 (300)
Q Consensus 98 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi~~ 177 (300)
+.||.||+.++++++.... . +.++++.|++.||||++|+++|+|+||+.+...+ +..|+++.+.+|+.+
T Consensus 2 ~~lt~eE~~~l~~~~~~~~--------~--~~~~~~~l~~~TG~R~~E~~~L~~~di~~~~~~~-~~~k~~~~~~~~~~~ 70 (179)
T 1ae9_A 2 SRLTADEYLKIYQAAESSP--------C--WLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYV-EQSKTGVKIAIPTAL 70 (179)
T ss_dssp CCCCHHHHHHHHHHGGGSC--------H--HHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEE-ECTTTCCEEEEETTC
T ss_pred CCCCHHHHHHHHHHHHHCC--------H--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-EECCCCEEEEEECCH
T ss_conf 9999999999999875688--------9--9999999999975759999836201033401478-742553034554668
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 247887532321001246777520012333222221111111012344201466--764259885889999999858888
Q gi|255764498|r 178 SALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQ--KKNISPHIIRHAFASHLLEGGADL 255 (300)
Q Consensus 178 ~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~--~~~~t~H~lRht~at~l~~~G~~~ 255 (300)
.....+..+..............+++.. ..+.++...+....+.++.+.++.. ...+++|++||++++ ++++|+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~g~~~ 148 (179)
T 1ae9_A 71 HIDALGISMKETLDKCKEILGGETIIAS-TRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSAR-LYEKQISD 148 (179)
T ss_dssp EEGGGTEEHHHHHHHHHHHTCCSBSSCC-TTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHH-HHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHCCCCH
T ss_conf 8999999998877531135776411103-577754442047899999999852356540148789999999-99959999
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCH
Q ss_conf 89999855899899899964599
Q gi|255764498|r 256 RTIQILLGHTDISTTQIYTHLLP 278 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~~Y~~~~~ 278 (300)
..||+++||+|++||++|.+...
T Consensus 149 ~~i~~~~GH~s~~~t~~Y~~~~~ 171 (179)
T 1ae9_A 149 KFAQHLLGHKSDTMASQFRDDRG 171 (179)
T ss_dssp HHHHHHHTC--------CEECSS
T ss_pred HHHHHHHCCCCHHHHHHHHHCCH
T ss_conf 99999838999999999985667
No 9
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=99.63 E-value=5.5e-16 Score=110.96 Aligned_cols=93 Identities=8% Similarity=0.264 Sum_probs=84.8
Q ss_pred CHH-HHHCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 646-6413899999999999999999754499-86889999999999999977998435322101123343210001222
Q gi|255764498|r 2 MSS-ERASSINTLSAYKRDLKEMQNFLNNKEI-SLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLR 79 (300)
Q Consensus 2 l~~-~R~~S~~T~~~Y~~~l~~f~~~~~~~~~-~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~ 79 (300)
|.. ++++|++|+++|+.+++.|..||+..++ ++.+++..++.+|+.++.++|++++|+++++++|++||+||++.|++
T Consensus 17 l~~~~~~ls~~T~~~Y~~~l~~f~~~l~~~~~~~l~~it~~~l~~y~~~l~~~g~s~~Ti~~~~~~lr~f~~~~~~~~~i 96 (117)
T 3nrw_A 17 LAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVV 96 (117)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99978186899999999999999999998633788768899999999998712226889969988999999999998996
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 222122221212221
Q gi|255764498|r 80 KDNPSDTLELPKKNH 94 (300)
Q Consensus 80 ~~np~~~i~~~k~~~ 94 (300)
+.||+..|..||.-+
T Consensus 97 ~~np~~~V~~Pkv~~ 111 (117)
T 3nrw_A 97 DEDLPEKVHVPTILE 111 (117)
T ss_dssp CTTSGGGCCCC----
T ss_pred CCCHHHHCCCCCCCC
T ss_conf 759999787998120
No 10
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=99.31 E-value=4.6e-12 Score=88.16 Aligned_cols=86 Identities=19% Similarity=0.192 Sum_probs=77.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
++++|++|+..|...++.+..+++ +.++.+++..+++.|+..+.+++ +++|+++.++.|+++|+||+..|+++.||+
T Consensus 16 ~~~~~~~T~~~y~~~l~~~~~~~g--~~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~~~l~~~f~~Av~~g~i~~NP~ 92 (103)
T 2oxo_A 16 SRGIKQKTLINYMSKIKAIRRGLP--DAPLEDITTKEIAAMLNGYIDEG-KAASAKLIRSTLSDAFREAIAEGHITTNHV 92 (103)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHSC--SCBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 879999999999999999999986--89677764698999999999847-715899999999999999998889576954
Q ss_pred CCCCCCCCC
Q ss_conf 222121222
Q gi|255764498|r 85 DTLELPKKN 93 (300)
Q Consensus 85 ~~i~~~k~~ 93 (300)
.+++.|+..
T Consensus 93 ~~vk~pk~k 101 (103)
T 2oxo_A 93 AATRAAKSE 101 (103)
T ss_dssp C--------
T ss_pred HHCCCCCCC
T ss_conf 316667878
No 11
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343}
Probab=99.31 E-value=1e-12 Score=92.02 Aligned_cols=84 Identities=17% Similarity=0.293 Sum_probs=76.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6413899999999999999999754499868899999999999999-779984353221011233432100012222221
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLS-QRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~-~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300)
++++|++|+++|+..++.|..|++ ++++.+++..++.+|..++. .+|++++|++++++.|++||+||+++|++..||
T Consensus 22 ~~~~s~~T~~~Y~~~l~~~~~~~~--~~~~~~it~~~i~~f~~~l~~~~~~s~~Ti~~~l~~lr~~~~~A~~~g~i~~nP 99 (112)
T 2key_A 22 SRRLEIGTFRHHKSCMRKFKEYCE--GLQFHELTEDFLRDYLIYMKKTLCNADSTAQRNLSTIKIYVSAAIKKGYMENDP 99 (112)
T ss_dssp HTTSCHHHHHHHHHHHHHTTTSCS--CCCTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 647999999999999999999845--599898699989999999987327770366999999999999999887943188
Q ss_pred CCCCCCC
Q ss_conf 2222121
Q gi|255764498|r 84 SDTLELP 90 (300)
Q Consensus 84 ~~~i~~~ 90 (300)
+..++..
T Consensus 100 f~~~~lk 106 (112)
T 2key_A 100 FKDFGLE 106 (112)
T ss_dssp HHHHTCC
T ss_pred CCCEEEE
T ss_conf 2124642
No 12
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=99.22 E-value=1.7e-11 Score=84.91 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=77.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 41389999999999999999975449986889999999999999977998435322101123343210001222222122
Q gi|255764498|r 6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSD 85 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~ 85 (300)
.+++++|++.|+..++.++.... .+..+.+++..++..|+..+.+++++++|+++.++.|+++|+||++.|++..||+.
T Consensus 21 ~~~~~~T~~~y~~~~~~~i~~~~-g~~~l~~i~~~~i~~~~~~~~~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 99 (118)
T 2kd1_A 21 HSVGIQTAKVLKGYLNSRIIPSL-GNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAA 99 (118)
T ss_dssp HHHCHHHHHHHHHHHTTTHHHHT-TSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTSCSSCTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH-CCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 72899999999999999999986-88769998999999998740001158999999999999999999988693539363
Q ss_pred CCCCCCCCCC
Q ss_conf 2212122211
Q gi|255764498|r 86 TLELPKKNHI 95 (300)
Q Consensus 86 ~i~~~k~~~~ 95 (300)
+++.|+..++
T Consensus 100 ~ik~pk~~kk 109 (118)
T 2kd1_A 100 KTKLPKADKE 109 (118)
T ss_dssp TCCCCSCCCC
T ss_pred CCCCCCCCCC
T ss_conf 0938999986
No 13
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=99.18 E-value=6.2e-11 Score=81.58 Aligned_cols=88 Identities=11% Similarity=0.241 Sum_probs=77.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 41389999999999999999975449986889999999999999977998435322101123343210001222222122
Q gi|255764498|r 6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSD 85 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~ 85 (300)
.+++++|...|...++.+..+++ +.++.+++..++.+|++.+.++ .+++|+++.++.|+++|+||++.|+++.||+.
T Consensus 15 ~~~k~st~~~~~~~~~~~~~~lg--~~~l~~It~~~i~~~~~~l~~~-~s~~t~~~~~~~l~~~f~~A~~~~~i~~NP~~ 91 (111)
T 2kiw_A 15 NDVKVSSVRAREKAIQHAIERFN--TKPIQTIKKHDYQRFVDDISAQ-YSKNYVDSIVASTNMIFKYAYDTRLIKAMPSE 91 (111)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHTT--SSCGGGCCHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCSCCTTT
T ss_pred HCCCHHHHHHHHHHHHHHHHHHC--CCCCHHHCCHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 50899999999999999999987--8834121004589999999975-04999998999999999999987891209074
Q ss_pred CCCCCCCCCCC
Q ss_conf 22121222111
Q gi|255764498|r 86 TLELPKKNHIL 96 (300)
Q Consensus 86 ~i~~~k~~~~~ 96 (300)
++..|+..+..
T Consensus 92 ~v~~pk~~~~~ 102 (111)
T 2kiw_A 92 GIKRPKKKVSV 102 (111)
T ss_dssp TCCCCSCCCCC
T ss_pred CCCCCCCCCCH
T ss_conf 08578887777
No 14
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=99.18 E-value=5.3e-12 Score=87.80 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=78.5
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 41389999999999999999975449986889999999999999977998435322101123343210001222222122
Q gi|255764498|r 6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSD 85 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~ 85 (300)
.++|++|++.|+..++.++.+. ..+.++.+++..++++|+..+.++|.+++|+++.++.|+++|+||++.|++..||+.
T Consensus 23 ~~~~~~T~~~y~~~~~~~i~~~-~g~~~l~~It~~~i~~~~~~l~~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 101 (117)
T 2kkp_A 23 PHLRQSTWESYETVLRLHVIPT-LGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQARESGLLLQNPTE 101 (117)
T ss_dssp CCCSCCCCSHHHHHHHHHHCCC-CCTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTTSCSSCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 7899999999999999999999-788809997779999888877625741778978999999999999998690529073
Q ss_pred CCCCCCCCCC
Q ss_conf 2212122211
Q gi|255764498|r 86 TLELPKKNHI 95 (300)
Q Consensus 86 ~i~~~k~~~~ 95 (300)
+++.||.+.+
T Consensus 102 ~vk~Pk~P~~ 111 (117)
T 2kkp_A 102 AAKPPRHPLE 111 (117)
T ss_dssp GSCCCCCCCC
T ss_pred HCCCCCCCCC
T ss_conf 1978999865
No 15
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=99.16 E-value=6.2e-11 Score=81.61 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=76.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64138999999999999999997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
+.+++++|...|+..++.+..+++ +.++.++++.++++|+..+. ++.+++|+++..+.|+++|+||+..|+++.||+
T Consensus 21 ~~~~~~~T~~~y~~~~~~i~~~~g--~~~l~~It~~~i~~~~~~l~-~~~s~~tv~~~~~~l~~~~~~Av~~g~I~~NP~ 97 (112)
T 3lys_A 21 KNAIDEMTYKGYEQTLKYLKTYMP--NVLISEITASSYQRALNKFA-ETHAKASTKGFHTRVRASIQCLIEEGRLQKDFT 97 (112)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSS--SCBTTTCCHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 288999999999999999999988--08020079999999999732-464268999999999999999998869030888
Q ss_pred CCCCCCCCC
Q ss_conf 222121222
Q gi|255764498|r 85 DTLELPKKN 93 (300)
Q Consensus 85 ~~i~~~k~~ 93 (300)
.++.++..+
T Consensus 98 ~~v~i~G~e 106 (112)
T 3lys_A 98 TRAVVKGLE 106 (112)
T ss_dssp SSTTCCCCC
T ss_pred CCCEECCEE
T ss_conf 888767301
No 16
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.14 E-value=1e-10 Score=80.33 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=75.3
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 41389999999999999999975449986889999999999999977998435322101123343210001222222122
Q gi|255764498|r 6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSD 85 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~ 85 (300)
.+++++|+..|...++.+..+++ +..+.+++..++++|+..+.+ +.+++|+++.++.|+++|+||+..|++..||+.
T Consensus 18 ~~~~~~T~~~y~~~~~~i~~~~g--~~~l~~it~~~i~~~~~~l~~-~~s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 94 (110)
T 2khq_A 18 PHVSESTKRHYESAYKHIKDHFR--HKLLKDIKRTEYQKFLNEYGL-THSYETIRKLNSYIRNAFDDAIHEGYVIKNPTY 94 (110)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHCS--SCBGGGCCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHTTCCCCCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77899999999999999999967--460400789999999999986-412899999999999999999988791019876
Q ss_pred CCCCCC
Q ss_conf 221212
Q gi|255764498|r 86 TLELPK 91 (300)
Q Consensus 86 ~i~~~k 91 (300)
+++.+.
T Consensus 95 ~vkl~~ 100 (110)
T 2khq_A 95 KAELHA 100 (110)
T ss_dssp GCCCCC
T ss_pred CCEECC
T ss_conf 877572
No 17
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=99.10 E-value=1.6e-10 Score=79.20 Aligned_cols=84 Identities=21% Similarity=0.246 Sum_probs=74.8
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 41389999999999999999975449986889999999999999977998435322101123343210001222222122
Q gi|255764498|r 6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSD 85 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~ 85 (300)
.++|++|++.|...++.+...+++ .++.+++..+++.|+. +.+.+++|+++..+.|+++|+||+..|+++.||+.
T Consensus 18 ~~~~~~T~~~~~~~~~~~~~~lg~--~~l~~It~~~i~~~l~---~~~~s~~t~~~~~~~l~~~f~~Av~~~~i~~NP~~ 92 (108)
T 2kob_A 18 DGVSVSQLNSYKNYCRNHLSPLYM--KSLSEILPADIQSIIN---ETKLAKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp HTCCHHHHHHHHHHHHHTSHHHHT--SBGGGCCHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 898999999999999999999868--8199987889999998---73326689999999999999999988880229162
Q ss_pred CCCCCCCCC
Q ss_conf 221212221
Q gi|255764498|r 86 TLELPKKNH 94 (300)
Q Consensus 86 ~i~~~k~~~ 94 (300)
+++.||...
T Consensus 93 ~vk~Pk~~p 101 (108)
T 2kob_A 93 YVRIPKIAL 101 (108)
T ss_dssp TCCCCCCCC
T ss_pred CCCCCCCCC
T ss_conf 386899984
No 18
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=98.46 E-value=1.1e-07 Score=62.67 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=68.2
Q ss_pred HHHCCHHHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 64138999999999999999-99754499868899999999999999779984353221011233432100012222221
Q gi|255764498|r 5 ERASSINTLSAYKRDLKEMQ-NFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNP 83 (300)
Q Consensus 5 ~R~~S~~T~~~Y~~~l~~f~-~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np 83 (300)
....|+.|.+.|.+.++.++ .+++ +.++.+|+..++..++..+.++| ++.|+++.++.|+++|+||+..|+++.||
T Consensus 24 k~~~~~~t~~~~~~~l~~~i~P~~G--~~~i~~It~~~i~~~l~~i~~~g-~~~ta~r~~~~l~~if~~Av~~g~i~~NP 100 (118)
T 2kj9_A 24 KTTWSEDYQRSVWTRLETYLFPDIG--NKDIAELDTGDLLVPIKKIEKLG-YLEIAMRVKQYATAIMRYAVQQKMIRFNP 100 (118)
T ss_dssp CCSSCHHHHHHHHHHHHHTSSTTGG--GSBGGGCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHTTSSSSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHHCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6888887999999999978889858--85699955599999999999935-88999999999999999999878833385
Q ss_pred CCCCCC
Q ss_conf 222212
Q gi|255764498|r 84 SDTLEL 89 (300)
Q Consensus 84 ~~~i~~ 89 (300)
+.+++.
T Consensus 101 ~~~i~~ 106 (118)
T 2kj9_A 101 AYDLEG 106 (118)
T ss_dssp HHHCCS
T ss_pred HHHHHH
T ss_conf 888987
No 19
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=98.44 E-value=1.1e-07 Score=62.59 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=68.3
Q ss_pred HHHHHCCHHHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 4664138999999999999999-997544998688999999999999997799843532210112334321000122222
Q gi|255764498|r 3 SSERASSINTLSAYKRDLKEMQ-NFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKD 81 (300)
Q Consensus 3 ~~~R~~S~~T~~~Y~~~l~~f~-~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~ 81 (300)
...+..|++|...|...++.++ ..++ +.++.+|+..++..++..+.++| ++.|.++.++.++++|+||+..|+++.
T Consensus 18 e~~~~~~~~t~~~~~~~l~~~i~P~lG--~~~i~~It~~di~~~l~~i~~~g-~~~ta~r~~~~l~~if~~Av~~g~i~~ 94 (121)
T 2kkv_A 18 ESNKRWSEDHRSRVLRYLELYIFPHIG--SSDIRQLKTSHLLAPIKEVDTSG-KHDVAQRLQQRVTAIMRYAVQNDYIDS 94 (121)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHSSSST--TSCTTCCCSGGGHHHHHHHHHTT-THHHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 987977761899999999989999938--86599973999999999999919-979999999999999999998688022
Q ss_pred CCCCCCC
Q ss_conf 2122221
Q gi|255764498|r 82 NPSDTLE 88 (300)
Q Consensus 82 np~~~i~ 88 (300)
||+.+++
T Consensus 95 NP~~~i~ 101 (121)
T 2kkv_A 95 NPASDMA 101 (121)
T ss_dssp CSCSSSS
T ss_pred CCHHHHH
T ss_conf 8577898
No 20
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=98.37 E-value=6.6e-07 Score=58.16 Aligned_cols=80 Identities=10% Similarity=0.207 Sum_probs=68.6
Q ss_pred HHCCHHHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 413899999999999999-9997544998688999999999999997799843532210112334321000122222212
Q gi|255764498|r 6 RASSINTLSAYKRDLKEM-QNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPS 84 (300)
Q Consensus 6 R~~S~~T~~~Y~~~l~~f-~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~ 84 (300)
...+++|...|...++.+ +.+++ +.++.+|+..++..++..+.++| ++.|+++.++.++++|+||+..|+++.||+
T Consensus 20 ~~~~~~t~~~~~~~l~~~i~P~lG--~~~i~~It~~~i~~~l~~i~~~g-~~~ta~r~~~~l~~if~~Av~~~~i~~NP~ 96 (118)
T 2kj8_A 20 QVWSVGYATELAKMFDDDILPIIG--GLEIQDIEPMQLLEVIRRFEDRG-AMERANKARRRCGEVFRYAIVTGRAKYNPA 96 (118)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT--TSBTTSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHTTSCSCCSH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC--CCCHHHHCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 438887999999999988788848--98299937999999999999959-979999999999999999998588023827
Q ss_pred CCCC
Q ss_conf 2221
Q gi|255764498|r 85 DTLE 88 (300)
Q Consensus 85 ~~i~ 88 (300)
.+++
T Consensus 97 ~~i~ 100 (118)
T 2kj8_A 97 PDLA 100 (118)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 8898
No 21
>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=98.23 E-value=3e-07 Score=60.21 Aligned_cols=83 Identities=8% Similarity=0.180 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 999999999999999-9975449986889999999999999977998435322101123343210001222222122221
Q gi|255764498|r 10 INTLSAYKRDLKEMQ-NFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLE 88 (300)
Q Consensus 10 ~~T~~~Y~~~l~~f~-~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~~np~~~i~ 88 (300)
..|...|.+.++.+. ..++ +.++.+|+..++..|++.+.+++ ++.|+++.++.|+++|+||+..|+++.||+.+++
T Consensus 25 ~~~~~~~~~~~~~~i~p~~G--~~~i~~It~~~i~~~~~~i~~~~-~~~ta~~~~~~l~~i~~~A~~~~~i~~NP~~~i~ 101 (116)
T 2kj5_A 25 WKHPNIVRSRIEKDIKPAIG--SLKVEDVKPRHIDDVLKAVMKRG-APSIANDTLRWLKRMFNYAIKRHIIEYNPAAAFD 101 (116)
T ss_dssp CSCHHHHHHHHHHTTSCSGG--GSBSSSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTTSCSSCGGGGSC
T ss_pred CCHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88199999999978489878--78088708999999999999836-6577999999999999999987795669724497
Q ss_pred CCCCCCC
Q ss_conf 2122211
Q gi|255764498|r 89 LPKKNHI 95 (300)
Q Consensus 89 ~~k~~~~ 95 (300)
.+..+.+
T Consensus 102 ~~~~g~k 108 (116)
T 2kj5_A 102 PGDAGGK 108 (116)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
T ss_conf 2458963
No 22
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=97.81 E-value=6.8e-05 Score=46.47 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=87.3
Q ss_pred HHCCCHHHHHCCCCCC-----------CCCCCHHHHHHHHHCCCC--CCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCCC
Q ss_conf 1100012210013433-----------343200000111100011--1222111110000-1247887532321001246
Q gi|255764498|r 130 FLLIELLYATGMRVSE-----------LVTLSAHTLNLTERTMII--QGKGNKERLVILS-PSALHALQMYKKTCSSMKM 195 (300)
Q Consensus 130 ~~il~ll~~tGlR~~E-----------i~~L~~~di~~~~~~i~v--~~K~~k~R~ipi~-~~~~~~l~~y~~~~~~~~~ 195 (300)
.+++.|+..|++|+|- ++.|+..+|.++++.+.+ .||.|....+-|. +.+...|.... ..
T Consensus 125 A~~v~Lld~~~iRVGne~Y~~en~SyGlTTLr~~HV~i~~~~i~~~F~GK~Gv~~~~~i~d~~l~~~l~~l~------~~ 198 (346)
T 3m4a_A 125 ALMTRLLHVARFRVGSDIYARQHKTYGLSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLAANMQKLL------DL 198 (346)
T ss_dssp HHHHHHHHHHCCCCCCHHHHHHHCCCCGGGCBGGGEEEETTEEEEEEECGGGCEEEEEECCHHHHHHHHHHH------TS
T ss_pred HHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCCEEEECCEEEEEEECCCCEEEEEEECCHHHHHHHHHHH------HC
T ss_conf 999999998433068821012149815002100335886896999997688738887746889999999998------45
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-----HCCCC-------------H
Q ss_conf 77752001233322--2221111111012344201466764259885889999999-----85888-------------8
Q gi|255764498|r 196 TGNDLWLFPSSTKT--GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLL-----EGGAD-------------L 255 (300)
Q Consensus 196 ~~~~~~lf~~~~~~--~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~-----~~G~~-------------~ 255 (300)
++.+.|+|.....+ .+++...++..++++. | .+|.-+||=-.||.++ +.+.+ +
T Consensus 199 ~g~~lf~~~~~~~g~~~~v~s~dVN~YLk~~~---g----~~TaKdFRTw~at~~~~~~L~~~~~~~s~~~~kk~i~~ai 271 (346)
T 3m4a_A 199 PGPWLFQTVDAGGGERRRIHSTELNAYLREVI---G----PFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCV 271 (346)
T ss_dssp CSSBSCEEECCCC-CEEECCHHHHHHHHHHHH---T----TSCHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCCCCCEECCCHHHHHHHHHHHC---C----CCCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 78153310015688710167999999999866---9----9873130343549999999983678899899999999999
Q ss_pred HHHHHHHCCCCHHHHH-HHHH
Q ss_conf 8999985589989989-9964
Q gi|255764498|r 256 RTIQILLGHTDISTTQ-IYTH 275 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~-~Y~~ 275 (300)
..|++.|||+ +++.. -|+|
T Consensus 272 ~~VA~~LgnT-paVcRksYI~ 291 (346)
T 3m4a_A 272 KFVADDLGNT-PAVTRGSYIC 291 (346)
T ss_dssp HHHHHHHTSC-HHHHHHHTSC
T ss_pred HHHHHHHCCC-HHHHHHHCCC
T ss_conf 9999984897-5445564378
No 23
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=97.52 E-value=8e-05 Score=46.07 Aligned_cols=74 Identities=15% Similarity=0.300 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 38999999999999999-99754499868899999999999999779984353221011233432100012222-22122
Q gi|255764498|r 8 SSINTLSAYKRDLKEMQ-NFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRK-DNPSD 85 (300)
Q Consensus 8 ~S~~T~~~Y~~~l~~f~-~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~~~-~np~~ 85 (300)
.|+.|.+.|++.++.+. ..++ +.++.+|+..++..++..+... ++.|.++.++.++++|+||+..|++. .||+.
T Consensus 19 ~~~~~~~~~~~~l~~~i~P~iG--~~~I~~I~~~~i~~~l~~~~~~--~~~tA~r~~~~~~~vf~~Ai~~g~~~~~NPA~ 94 (106)
T 2khv_A 19 KNTKHADQWTNTIKTYCGPVIG--PLSVQDVDTKLIMKVLDPIWEQ--KPETASRLRGRIESVLDWATVRGYREGDNPAR 94 (106)
T ss_dssp TTSTHHHHHHHHHHHHTHHHHT--TSBSSSCCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHTSSCSCCTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHCC--CCCHHHHCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 9988999999999999888829--9929996889999997999965--19999999999999999999939867898276
No 24
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2}
Probab=97.42 E-value=8.2e-05 Score=45.99 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=67.4
Q ss_pred CCCHHHHHCCCCCCCCCCCHHHHHH-HHHCCCCCC--C-CC----CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0001221001343334320000011-110001112--2-21----11110000124788753232100124677752001
Q gi|255764498|r 132 LIELLYATGMRVSELVTLSAHTLNL-TERTMIIQG--K-GN----KERLVILSPSALHALQMYKKTCSSMKMTGNDLWLF 203 (300)
Q Consensus 132 il~ll~~tGlR~~Ei~~L~~~di~~-~~~~i~v~~--K-~~----k~R~ipi~~~~~~~l~~y~~~~~~~~~~~~~~~lf 203 (300)
.+.|+.-||-|+.||.. -..|.. +...+...| | ++ .+..||.--+....|..+...| ..... ..+--
T Consensus 285 AiGLAlATGRR~~EILk--tg~F~~s~~ysLlFsGQaKKr~~~e~~syEIPTLidAdlVIkAikrLR-~l~~~--e~l~~ 359 (558)
T 2v6e_A 285 AFALAALSGRRMIEIML--QGEFSVAGKYTVTFLGQAKKRSEDKGISRKIYTLCDATLFVSLVNELR-SCPAA--ADFDE 359 (558)
T ss_dssp HHHHHHHHCCCHHHHHT--TCEEEECSSSEEEEECCTTCCCCSCCCEEEEECSSCHHHHHHHHHHHT-TSGGG--TTHHH
T ss_pred HHHHHHHHCCCHHHHHH--CCEEEECCCCEEEEECHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHH-HCCCH--HCCCC
T ss_conf 99999992764887640--055654798469984033106899877546432035899999999998-37102--20244
Q ss_pred CC---CCCCCCCCCCCCCC----CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH---------CCCCHH-HHHHHHCCCC
Q ss_conf 23---33222221111111----0123442014667642598858899999998---------588888-9999855899
Q gi|255764498|r 204 PS---STKTGHLSRQVFAR----DLKALAARAGIQKKNISPHIIRHAFASHLLE---------GGADLR-TIQILLGHTD 266 (300)
Q Consensus 204 ~~---~~~~~~~s~~~~~~----~~~~~~~~~gi~~~~~t~H~lRht~at~l~~---------~G~~~~-~v~~~lGH~s 266 (300)
+. ...........++. .++.+.+.. ++...+++|++|+-|+--.++ ++++.. .++++|||.+
T Consensus 360 l~~~~~~~~~~~~N~~IN~~~a~~ln~~~k~l-f~~~e~s~~DlRaIYa~IAf~~Ff~~d~r~k~vden~F~k~VLGHed 438 (558)
T 2v6e_A 360 VIKGYGENDTRSENGRINAILATAFNPWVKTF-LGDDRRVYKDSRAIYARIAYEMFFRVDPRWKNVDEDVFFMEILGHDD 438 (558)
T ss_dssp HTTCSSTTCCCCHHHHHHHHHHHHHHHHHHHH-HSSSSCCTTHHHHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEECCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCC
T ss_conf 22222321127789999999999999999984-78863300430668876667654355323126879999999857896
Q ss_pred HHHHHHHHH
Q ss_conf 899899964
Q gi|255764498|r 267 ISTTQIYTH 275 (300)
Q Consensus 267 ~~tT~~Y~~ 275 (300)
+.|+..|-+
T Consensus 439 idTq~hY~~ 447 (558)
T 2v6e_A 439 ENTQLHYKQ 447 (558)
T ss_dssp TTGGGSSCC
T ss_pred HHHHHHHHE
T ss_conf 144445653
No 25
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=97.07 E-value=0.0017 Score=38.27 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=75.3
Q ss_pred HHCCCHHHHHCCCCCC-----------CCCCCHHHHHHHHHCCCC--CCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCC
Q ss_conf 1100012210013433-----------343200000111100011--122211111000--0124788753232100124
Q gi|255764498|r 130 FLLIELLYATGMRVSE-----------LVTLSAHTLNLTERTMII--QGKGNKERLVIL--SPSALHALQMYKKTCSSMK 194 (300)
Q Consensus 130 ~~il~ll~~tGlR~~E-----------i~~L~~~di~~~~~~i~v--~~K~~k~R~ipi--~~~~~~~l~~y~~~~~~~~ 194 (300)
.+++.|+-.|.+|+|- ++.|+..+|.++++.+.+ .||.|+.+.+-| .+.+...|.... .
T Consensus 118 A~~v~Lld~~~iRVGne~Ya~~N~SyGlTTLr~rHV~v~g~~i~f~F~GK~Gv~~~~~i~~d~~l~~~l~~~~------~ 191 (314)
T 2h7g_X 118 AVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLT------D 191 (314)
T ss_dssp HHHHHHHHHHCCCCCCHHHHHHHCCCCSTTCBGGGEEEETTEEEEEEECGGGCEEEEEEETTSTTHHHHHHHC------C
T ss_pred HHHHHHHHHHCEECCCHHHHHCCCCCCEEEEECCCEEEECCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHH------H
T ss_conf 9999999862241577432220598150020101177879979999875888458999626589999999997------5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC--------CC-----------CH
Q ss_conf 677752001233322222111111101234420146676425988588999999985--------88-----------88
Q gi|255764498|r 195 MTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEG--------GA-----------DL 255 (300)
Q Consensus 195 ~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~--------G~-----------~~ 255 (300)
.++...++|-. ++.+.++..++ .. .+|..+||--.||.++.. .. -+
T Consensus 192 ~~~~~~~lf~~------v~~~~vn~~l~----~~-----~~taKdFRTw~at~~a~~~l~~~~~~~~~~~~~kk~i~~~i 256 (314)
T 2h7g_X 192 DSSPEEFLFNK------LSERKVYESIK----QF-----GIRIKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTI 256 (314)
T ss_dssp TTCTTSBSSTT------CCHHHHHHHHG----GG-----TSCHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHH
T ss_pred CCCCHHEEEEE------CCCHHHHHHHH----HC-----CCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 57810157544------46267899888----35-----84078898646259999999851676675678899999999
Q ss_pred HHHHHHHCCCCHHHHH-HHHH
Q ss_conf 8999985589989989-9964
Q gi|255764498|r 256 RTIQILLGHTDISTTQ-IYTH 275 (300)
Q Consensus 256 ~~v~~~lGH~s~~tT~-~Y~~ 275 (300)
..|++.|||+- ++.. -|+|
T Consensus 257 ~~vA~~LgNTp-aVcR~sYIh 276 (314)
T 2h7g_X 257 KQTAEVVGHTP-SISKRAYMA 276 (314)
T ss_dssp HHHHHHHTCCT-TTHHHHSTH
T ss_pred HHHHHHHCCCH-HHHHHHCCC
T ss_conf 99999838975-555674579
No 26
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=96.16 E-value=0.016 Score=32.63 Aligned_cols=102 Identities=21% Similarity=0.303 Sum_probs=65.0
Q ss_pred HHCCCHHHHHCCCCCC-----------CCCCCHHHHHHH-HHCCCC--CCCCCCCC--CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1100012210013433-----------343200000111-100011--12221111--1000012478875323210012
Q gi|255764498|r 130 FLLIELLYATGMRVSE-----------LVTLSAHTLNLT-ERTMII--QGKGNKER--LVILSPSALHALQMYKKTCSSM 193 (300)
Q Consensus 130 ~~il~ll~~tGlR~~E-----------i~~L~~~di~~~-~~~i~v--~~K~~k~R--~ipi~~~~~~~l~~y~~~~~~~ 193 (300)
.+++.|+-.|++|+|- ++.|+..+|.+. ++.+.+ .||.+..+ .|.+++.+...|..+...
T Consensus 278 A~av~LID~~alRvGnEkya~en~T~GltTLr~eHV~l~~~~~v~fdF~GK~gvr~~~~v~~d~~v~k~L~~~~~~---- 353 (432)
T 2b9s_A 278 AVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRR---- 353 (432)
T ss_dssp HHHHHHHHHHCCCCCCCCCTTSCCCCCGGGCBGGGEEECTTSEEEEEEECGGGCEEEEEEECCHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHCCCCCCHHHHHCCCCEEECCCCHHHEEECCCCEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHC----
T ss_conf 9999999973843488311002797844535475447648987999974776717999972378999999999756----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 467775200123332222211111110123442014667642598858899999998
Q gi|255764498|r 194 KMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLE 250 (300)
Q Consensus 194 ~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~ 250 (300)
..++ ..||- .++...++..++.+ | .++|...||=-.||.++.
T Consensus 354 k~pg--d~LF~------~I~s~~vN~yLk~~----~---~g~TAKdFRTwnAS~tl~ 395 (432)
T 2b9s_A 354 KSPG--MDIFD------QLNPTQLNDHLKSF----M---DGLSAKVFRTYNASITLD 395 (432)
T ss_dssp CCTT--SBTTT------TCCHHHHHHHHTTT----S---TTCCTTHHHHHHHHHHHH
T ss_pred CCCH--HHHCC------CCCHHHHHHHHHHH----C---CCCCEECCCCCHHHHHHH
T ss_conf 7983--76207------38989999999986----8---999822621434699999
No 27
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=93.82 E-value=0.15 Score=27.06 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=71.2
Q ss_pred HCCCHHHHHCCCCC------C------CCCCCHHHHHHH------HHCCCC--CCCCCCC--CCCHHHHHHHHHHHHHHH
Q ss_conf 10001221001343------3------343200000111------100011--1222111--110000124788753232
Q gi|255764498|r 131 LLIELLYATGMRVS------E------LVTLSAHTLNLT------ERTMII--QGKGNKE--RLVILSPSALHALQMYKK 188 (300)
Q Consensus 131 ~il~ll~~tGlR~~------E------i~~L~~~di~~~------~~~i~v--~~K~~k~--R~ipi~~~~~~~l~~y~~ 188 (300)
+++.|+-.+.+|+| | +|.|+..+|.+. ++.+.+ .||.+.. ..|++++.+...|..+..
T Consensus 303 ~av~LID~lalRVGNEky~~EnadTvG~tTLR~eHV~l~~e~~~~~~~i~fdFlGKdgir~~~~V~vd~~v~knLk~~~~ 382 (591)
T 1a31_A 303 VALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFME 382 (591)
T ss_dssp HHHHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCEEECCCCHHHEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 99999987433047754453349977432473866353045567786389986067771676673479999999999986
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC--------CCCH-----
Q ss_conf 100124677752001233322222111111101234420146676425988588999999985--------8888-----
Q gi|255764498|r 189 TCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEG--------GADL----- 255 (300)
Q Consensus 189 ~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~--------G~~~----- 255 (300)
. ..+ ...||- .++...++..++.+ + +++|...||=-.||..+.. +.++
T Consensus 383 ~----K~p--~d~LF~------~I~s~~VN~yLke~----m---~glTAKdFRTwnAS~tl~~~L~el~~~~~sv~eK~~ 443 (591)
T 1a31_A 383 N----KQP--EDDLFD------RLNTGILNKHLQDL----M---EGLTAKVFRTYNASITLQQQLKELTAPDENIPAKIL 443 (591)
T ss_dssp T----CCT--TSBTTT------TCCHHHHHHHHHHH----S---TTCCHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred C----CCC--CCCCCC------CCCHHHHHHHHHHH----C---CCCCEEHHHHCCHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 6----897--012443------28868889999986----4---897400110101589999999857899999999999
Q ss_pred ------HHHHHHHCCCC
Q ss_conf ------89999855899
Q gi|255764498|r 256 ------RTIQILLGHTD 266 (300)
Q Consensus 256 ------~~v~~~lGH~s 266 (300)
..|+-+++|+.
T Consensus 444 ~yn~ANr~VAILCNHQR 460 (591)
T 1a31_A 444 SYNRANRAVAILCNHQR 460 (591)
T ss_dssp HHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999999708988
No 28
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=90.73 E-value=0.15 Score=27.02 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999-779984353221011233432100012
Q gi|255764498|r 39 TNHLISYLNHLS-QRKLVTSSQRRKISVIRQFYNFLCYEG 77 (300)
Q Consensus 39 ~~~i~~~~~~l~-~~~~s~~T~~~~~~~l~~~~~~~~~~~ 77 (300)
...|++|++++. ++|+|++|++.|...|+.|++|+...+
T Consensus 3 ~~~i~~fl~~l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~ 42 (290)
T 1a0p_A 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG 42 (290)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999869089999999999999999998859
No 29
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=89.43 E-value=0.29 Score=25.33 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=32.1
Q ss_pred HCCHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999-99999999997799843532210112334321000122
Q gi|255764498|r 36 AASTN-HLISYLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGL 78 (300)
Q Consensus 36 ~i~~~-~i~~~~~~l~~~~~s~~T~~~~~~~l~~~~~~~~~~~~ 78 (300)
+++.. -++.|+..+ ..+++++|+..+...|+.|++|+...|.
T Consensus 6 ~~t~~e~ie~yl~~~-~~~ls~~T~~~Y~~~l~~f~~~l~~~~~ 48 (117)
T 3nrw_A 6 SLSPREARDRYLAHR-QTDAADASIKSFRYRLKHFVEWAEERDI 48 (117)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999997-8186899999999999999999998633
No 30
>1flo_A FLP recombinase; tyrosine recombinase, protein-DNA complex, holliday- junction, domain-swapping, ligase, lyase/DNA complex; 2.65A {Saccharomyces cerevisiae} SCOP: a.60.9.1 d.163.1.1 PDB: 1m6x_A* 1p4e_A*
Probab=88.30 E-value=1.1 Score=22.00 Aligned_cols=142 Identities=16% Similarity=0.193 Sum_probs=73.4
Q ss_pred HHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH-----CCCC---CCCCCCCCCC---HHHH--HHHHHHHHHHHHHCCCCC
Q ss_conf 3110001221001343334320000011110-----0011---1222111110---0001--247887532321001246
Q gi|255764498|r 129 IFLLIELLYATGMRVSELVTLSAHTLNLTER-----TMII---QGKGNKERLV---ILSP--SALHALQMYKKTCSSMKM 195 (300)
Q Consensus 129 ~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~-----~i~v---~~K~~k~R~i---pi~~--~~~~~l~~y~~~~~~~~~ 195 (300)
+..|+.+-+.-+||.+++.++.++-+.+-.. .+++ .+|++++|.| |+.. +..-.|.+|+....+...
T Consensus 177 y~flll~Tf~NCcR~sDLKN~DP~TFeiv~Nk~LG~ilRalV~ETKTrk~RfIyFFPv~gr~DpLlAL~d~l~~~~Pv~K 256 (422)
T 1flo_A 177 YQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLK 256 (422)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCEEEEEEEECCTTTSCEEEEEECSCTTSCCEEEEECCCSSSCCHHHHHHHHHHHCCCEEC
T ss_pred HHHHHHHHHHHHHCCHHCCCCCCCCEEEECCCCHHHHEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999873302000246893315762354200022567403556652049997558987726879999873488655
Q ss_pred --C--C-----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHCCCCHH--HHHHHH
Q ss_conf --7--7-----752001233322222111111101234420--14667642598858899999998588888--999985
Q gi|255764498|r 196 --T--G-----NDLWLFPSSTKTGHLSRQVFARDLKALAAR--AGIQKKNISPHIIRHAFASHLLEGGADLR--TIQILL 262 (300)
Q Consensus 196 --~--~-----~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~--~gi~~~~~t~H~lRht~at~l~~~G~~~~--~v~~~l 262 (300)
. . ...|-+.-.. --.+..+.+.+.... .+|... --.|--||-.+|-|-.++.+.. .+..|.
T Consensus 257 ~~srtsn~~s~~Q~yQlLrds-----Lv~~YdRFl~K~~~e~iF~I~nG-PKSHlGRHLM~SyLs~~~lg~~vs~~GNWS 330 (422)
T 1flo_A 257 RVNRTGNSSSNKQEYQLLKDN-----LVRSYNKALKKNAPYSIFAIKNG-PKSHIGRHLMTSFLSMKGLTELTNVVGNWS 330 (422)
T ss_dssp CCCBTTCCSCCCCCEESSCTT-----HHHHHHHHHHHHCSSGGGGSTTC-CSTTHHHHHHHHHHHHTTCTTSHHHHHTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHH-----HHHHHHHHHHHCCCCCEECCCCC-CHHHHHHHHHHHHHCCCCCCCEECCCCCCC
T ss_conf 445456663225678888888-----88878899973788754405789-667777889998843056775111467730
Q ss_pred CCCCHHHH-HHHHHC
Q ss_conf 58998998-999645
Q gi|255764498|r 263 GHTDISTT-QIYTHL 276 (300)
Q Consensus 263 GH~s~~tT-~~Y~~~ 276 (300)
+-..-.+. ..|+|.
T Consensus 331 ~~reS~VARs~Y~H~ 345 (422)
T 1flo_A 331 DKRASAVARTTYTHQ 345 (422)
T ss_dssp CC-------CCSSCC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 134554554302434
No 31
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=69.70 E-value=4.5 Score=18.43 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHH----HHHHHCCHHHHHH
Q ss_conf 222111111101234420146676425988588999999985-8888899998558998998----9996459999999
Q gi|255764498|r 210 GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEG-GADLRTIQILLGHTDISTT----QIYTHLLPDKLQK 283 (300)
Q Consensus 210 ~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~-G~~~~~v~~~lGH~s~~tT----~~Y~~~~~~~~~~ 283 (300)
-.+|..++.+.|++. .|..... -.+.+|=..|..++.. +.++..|+..+|-+|.+.. ..|..+++...|+
T Consensus 37 ~~~S~~~l~r~fk~~---~g~s~~~-~i~~~Rl~~a~~~L~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~~yR~ 111 (129)
T 1bl0_A 37 SGYSKWHLQRMFKKE---TGHSLGQ-YIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRM 111 (129)
T ss_dssp SSSCHHHHHHHHHHH---HSSCHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHHHT
T ss_pred HCCCHHHHHHHHHHH---HCCCHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 892999999999998---6909447-78437999999998767999999999968998789999999998909999998
No 32
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=58.34 E-value=8.1 Score=16.96 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHH----HHHHHCCHHHHHHH
Q ss_conf 222111111101234420146676425988588999999985-8888899998558998998----99964599999999
Q gi|255764498|r 210 GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEG-GADLRTIQILLGHTDISTT----QIYTHLLPDKLQKL 284 (300)
Q Consensus 210 ~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~-G~~~~~v~~~lGH~s~~tT----~~Y~~~~~~~~~~~ 284 (300)
-.+|.+++.+.|++ .|.....+ ....|=..|-.++.. +.++..|+..+|-+|.+.. ..|..+++.+.++.
T Consensus 33 ~~~S~~~l~r~fk~----~g~t~~~y-i~~~Rl~~A~~lL~~~~~~i~~IA~~~Gf~~~s~f~r~Fk~~~G~tP~~yR~~ 107 (120)
T 3mkl_A 33 LLMSPSLLKKKLRE----EETSYSQL-LTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQER 107 (120)
T ss_dssp TTCCHHHHHHHHHH----TTCCHHHH-HHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HCCCHHHHHHHHHH----CCCCHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 89399999999998----39999999-99999999999860565839999999789988999999999999099999997
Q ss_pred HH
Q ss_conf 99
Q gi|255764498|r 285 VQ 286 (300)
Q Consensus 285 ~~ 286 (300)
..
T Consensus 108 ~~ 109 (120)
T 3mkl_A 108 SA 109 (120)
T ss_dssp C-
T ss_pred HH
T ss_conf 66
No 33
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=56.06 E-value=8.8 Score=16.74 Aligned_cols=24 Identities=4% Similarity=0.275 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999999999999999975449986
Q gi|255764498|r 10 INTLSAYKRDLKEMQNFLNNKEISL 34 (300)
Q Consensus 10 ~~T~~~Y~~~l~~f~~~~~~~~~~~ 34 (300)
....+-|+. .+-.++-+..+|.++
T Consensus 7 ~ei~rlfrs-RkTilEML~dRGY~V 30 (215)
T 1dzf_A 7 RNISRLWRA-FRTVKEMVKDRGYFI 30 (215)
T ss_dssp HHHHHHHHH-HHHHHHHHHHTTBCC
T ss_pred HHHHHHHHH-HHHHHHHHHHCCCCC
T ss_conf 899999999-999999999779987
No 34
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=42.57 E-value=15 Score=15.47 Aligned_cols=70 Identities=19% Similarity=0.101 Sum_probs=47.8
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHH----HHHHHCCHHHHHHH
Q ss_conf 22111111101234420146676425988588999999985-8888899998558998998----99964599999999
Q gi|255764498|r 211 HLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEG-GADLRTIQILLGHTDISTT----QIYTHLLPDKLQKL 284 (300)
Q Consensus 211 ~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~-G~~~~~v~~~lGH~s~~tT----~~Y~~~~~~~~~~~ 284 (300)
.+|.+++.+.|++.. |.....+ ...+|=..|..++.. ..++..|+..+|-+|.+.. ..|..+++...|++
T Consensus 31 ~~s~~~l~r~fk~~~---g~s~~~~-i~~~Rl~~a~~lL~~~~~si~~IA~~~Gf~~~~~f~r~Fk~~~G~tP~~yR~~ 105 (107)
T 2k9s_A 31 CLSPSRLSHLFRQQL---GISVLSW-REDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAG 105 (107)
T ss_dssp TSCHHHHHHHHHHHH---SSCHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHHHHHHT
T ss_pred CCCHHHHHHHHHHHH---CCCHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHC
T ss_conf 929999999999998---9198999-98889998989886668318579998499988999999999889099999704
No 35
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=36.34 E-value=18 Score=14.89 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHH----HHHHHCCHHHHH
Q ss_conf 22111111101234420146676425988588999999985-8888899998558998998----999645999999
Q gi|255764498|r 211 HLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEG-GADLRTIQILLGHTDISTT----QIYTHLLPDKLQ 282 (300)
Q Consensus 211 ~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~-G~~~~~v~~~lGH~s~~tT----~~Y~~~~~~~~~ 282 (300)
.+|.+.+.+.|++. .|+....+ ...+|-..|..++.. +.++..|+..+|-+|.+.. ..+..+++...|
T Consensus 30 ~~s~~~l~r~fk~~---~g~s~~~y-i~~~Rl~~a~~lL~~~~~si~~IA~~~Gf~~~~~f~r~Fk~~~G~sP~~yR 102 (103)
T 3lsg_A 30 DLSSGYLSIMFKKN---FGIPFQDY-LLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPKQYR 102 (103)
T ss_dssp TCCHHHHHHHHHHH---HSSCHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHHT
T ss_pred CCCHHHHHHHHHHH---HCCCHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHC
T ss_conf 92999999999998---89099999-997899999889877896399999998579989999999999890999980
No 36
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=26.92 E-value=26 Score=13.95 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHH----HHHHHCCHHHHHHHH
Q ss_conf 221111111012344201466764259885889999999-858888899998558998998----999645999999999
Q gi|255764498|r 211 HLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLL-EGGADLRTIQILLGHTDISTT----QIYTHLLPDKLQKLV 285 (300)
Q Consensus 211 ~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~-~~G~~~~~v~~~lGH~s~~tT----~~Y~~~~~~~~~~~~ 285 (300)
.++.+.+.+.|++. .|+....+ ...+|=..|..++ ..+.++..|+..+|-+|.+.. ..+..+++..-|+..
T Consensus 32 ~~s~~~l~r~fk~~---~g~s~~~y-i~~~Rl~~a~~~L~~~~~~i~~IA~~~Gf~~~s~F~~~Fk~~~g~tP~~yRk~~ 107 (108)
T 3oou_A 32 HINAVYLGQLFQKE---MGEHFTDY-LNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETPNRYRKIH 107 (108)
T ss_dssp TSCHHHHHHHHHHH---HSSCHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HCCCHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 92999999999999---89787999-998988778986204554599999992999889999999998890999999865
No 37
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.92 E-value=35 Score=13.26 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 642598858899999998588888999985589989989996
Q gi|255764498|r 233 KNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYT 274 (300)
Q Consensus 233 ~~~t~H~lRht~at~l~~~G~~~~~v~~~lGH~s~~tT~~Y~ 274 (300)
+.+|+..+.+ |-.|+++|.+...|++.+|= |.+|.-+|.
T Consensus 4 ~kLt~~q~~~--a~~l~~~G~s~~~iA~~~gV-sr~TlYryl 42 (52)
T 1jko_C 4 RAINKHEQEQ--ISRLLEKGHPRQQLAIIFGI-GVSTLYRYF 42 (52)
T ss_dssp CSSCTTHHHH--HHHHHHTTCCHHHHHHTTSC-CHHHHHHHS
T ss_pred CCCCHHHHHH--HHHHHHCCCCHHHHHHHHCC-CHHHHHHHC
T ss_conf 8799999999--99999978989999999797-999999985
Done!