HHSEARCH alignment of GI: 255764498 and SCOP domain: d1ae9a_

Alignment
>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda [TaxId: 10710]}
Probab=99.89  E-value=7.6e-25  Score=161.13  Aligned_cols=166  Identities=19%  Similarity=0.122  Sum_probs=118.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             23320246999986432001256102776543110001221001343334320000011110001112221111100001
Q gi|255764498|r   98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSP  177 (300)
Q Consensus        98 ~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi~~  177 (300)
                      ++||.||+.++++++.....        .+  .+++.+++.||||++|+++|+|+||+.+...+. ..|+++.+.+|+.+
T Consensus         2 ~~lt~ee~~~l~~~~~~~~~--------~~--~~~~~l~~~tG~R~~El~~L~~~di~~~~~~i~-~~K~~~~~~~~~~~   70 (179)
T d1ae9a_           2 SRLTADEYLKIYQAAESSPC--------WL--RLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE-QSKTGVKIAIPTAL   70 (179)
T ss_dssp             CCCCHHHHHHHHHHGGGSCH--------HH--HHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEE-CTTTCCEEEEETTC
T ss_pred             CCCCHHHHHHHHHHHHHCCH--------HH--HHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEE-ECCCCCCCCCCCCH
T ss_conf             98999999999998756889--------99--999999999679987646662026630111464-11333323466741


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             247887532321001246777520012333222221111111012344201466--764259885889999999858888
Q gi|255764498|r  178 SALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQ--KKNISPHIIRHAFASHLLEGGADL  255 (300)
Q Consensus       178 ~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~--~~~~t~H~lRht~at~l~~~G~~~  255 (300)
                      .....+..+..............+++ ....+.+++...+...+..+.+.+++.  ...+++|++||+ ||.++++|+|+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~lR~~-~t~~~~~g~~~  148 (179)
T d1ae9a_          71 HIDALGISMKETLDKCKEILGGETII-ASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYEKQISD  148 (179)
T ss_dssp             EEGGGTEEHHHHHHHHHHHTCCSBSS-CCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHH-HHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEE-EEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH-HHHHHHCCCCH
T ss_conf             56778877655443311357765213-33047763345303466666531134433231037788888-88999849999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHC
Q ss_conf             899998558998998999645
Q gi|255764498|r  256 RTIQILLGHTDISTTQIYTHL  276 (300)
Q Consensus       256 ~~v~~~lGH~s~~tT~~Y~~~  276 (300)
                      ..||.+|||+|++||++|.+.
T Consensus       149 ~~i~~~lGH~s~~~t~~Y~~~  169 (179)
T d1ae9a_         149 KFAQHLLGHKSDTMASQFRDD  169 (179)
T ss_dssp             HHHHHHHTC--------CEEC
T ss_pred             HHHHHHHCCCCHHHHHHHHHC
T ss_conf             999999589999999998736


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Lambda integrase-like, catalytic core
domain: Integrase (Int)
species: Bacteriophage lambda [TaxId: 10710]