HHSEARCH alignment of GI: 255764498 and SCOP domain: d1aiha_

Alignment
>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]}
Probab=99.97  E-value=1.1e-31  Score=200.97  Aligned_cols=166  Identities=28%  Similarity=0.408  Sum_probs=125.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf             12233202469999864320012561027765431100012210013433343200000111100011122211111000
Q gi|255764498|r   96 LPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVIL  175 (300)
Q Consensus        96 ~~~~ls~~e~~~ll~~~~~~~~~~~~~~~~~~R~~~il~ll~~tGlR~~Ei~~L~~~di~~~~~~i~v~~K~~k~R~ipi  175 (300)
                      ...+|+++|+.+|++++.... .        ...++++.++++||||++|+++|+|+||+++. ...+.+|++++|.|||
T Consensus         3 ~~~~Lt~eEi~~l~~~~~~~~-~--------~~~~~~i~l~~~tG~R~~E~~~L~~~dI~~~~-~~~~~~K~~~~r~ipl   72 (170)
T d1aiha_           3 ELAFLYERDIYRLLAECDNSR-N--------PDLGLIVRICLATGARWSEAETLTQSQVMPYK-ITFTNTKSKKNRTVPI   72 (170)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSS-S--------TTHHHHHHHHHHHCCCHHHHHTCBTTTEETTE-EEEESSSSSCEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHCC-C--------HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC-EEECCCCCCCHHHHHH
T ss_conf             466899999999999863658-9--------66999999999977761124443310244211-0211444430057766


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             01247887532321001246777520012333222221111111012344201466764259885889999999858888
Q gi|255764498|r  176 SPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADL  255 (300)
Q Consensus       176 ~~~~~~~l~~y~~~~~~~~~~~~~~~lf~~~~~~~~~s~~~~~~~~~~~~~~~gi~~~~~t~H~lRht~at~l~~~G~~~  255 (300)
                      ++.+.++|..+            ..++|+...       ..+...+  .....++. ++++||+|||||||.|+++|+|+
T Consensus        73 ~~~~~~~l~~~------------~~~~~~~~~-------~~~~~~~--~~~~~~~~-~~~~~H~lRht~at~l~~~g~~~  130 (170)
T d1aiha_          73 SDELFDMLPKK------------RGRLFNDAY-------ESFENAV--LRAEIELP-KGQLTHVLRHTFASHFMMNGGNI  130 (170)
T ss_dssp             CHHHHHHSCCC------------SSBSSCCCH-------HHHHHHH--HHTTCCCC-TTCTTTHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHH------------HCCCCCCCH-------HHHHHHH--HHHHHCCC-CCCEEEECHHHHHHHHHCCCCCH
T ss_conf             99999998751------------001101111-------2443345--66650257-76101110465514552169899


Q ss_pred             HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHC
Q ss_conf             899998558998998999645999999999982801110
Q gi|255764498|r  256 RTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKK  294 (300)
Q Consensus       256 ~~v~~~lGH~s~~tT~~Y~~~~~~~~~~~~~~~~p~~~~  294 (300)
                      ..|+++|||+|++||++|+|++++.+++++ +.||++.+
T Consensus       131 ~~i~~~lGH~~~~~t~~Y~~~~~~~~~~a~-~~~p~~~~  168 (170)
T d1aiha_         131 LVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNPLSNP  168 (170)
T ss_dssp             HHHHHHHTCSSHHHHGGGGGGSCCCTTHHH-HHSTTTSC
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH-HHCCCCCC
T ss_conf             999998089998999988767999999999-86857687


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Lambda integrase-like, catalytic core
domain: Integrase
species: Bacteriophage HP1 [TaxId: 10690]