RPSBLAST alignment for GI: 255764498 and conserved domain: cd01196
>gnl|CDD|29517 cd01196, INT_VanD, VanD integrase, IntD, and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases including those similar to IntD, a putative integrase-like protein, a component of the vanD glycopeptide resistance cluster in Enterococcus faecium BM4339. Members of this CD are predominantly bacterial in origin.. Length = 263
Score = 60.4 bits (146), Expect = 5e-10
Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 32/278 (11%)
Query: 9 SINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQ 68
S NT+S+Y R + +Q FLN KE++ +L+ Y +L Q + ++ I +
Sbjct: 11 SKNTVSSYLRTV--VQYFLNGKELT-----KPNLLEYKGYL-QENFKAQTVNLRLQGINK 62
Query: 69 FYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVR 128
+ F+ + L+ +++ +K L + L K +
Sbjct: 63 YLEFIGWHDLK----LKFVKVQQKA-FLENVISDADYKFLKTALKADGNE---------E 108
Query: 129 IFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKK 188
+ ++ L ATG RVSEL+ + + I KG K R + + + + K
Sbjct: 109 WYFVVWFLAATGARVSELIHIKVEHVQTGY--ADIYSKGGKIRRLYIPKNLRVEALKWLK 166
Query: 189 TCSSMKMTGNDLWLFPSSTKTGH-LSRQVFARDLKALAARAGIQKKNISPHIIRHAFASH 247
+ + ++L + G ++ + A+ LK AA+ + + + PH RH FA +
Sbjct: 167 ---ELNLDSGYIFL----NRFGKPITARGIAQQLKNYAAKYKMNPRVVYPHSFRHLFAKN 219
Query: 248 LLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLV 285
L DL + L+GH I TT+IY + Q++V
Sbjct: 220 FLAKYNDLALLADLMGHESIETTRIYLRKTATEQQRIV 257