RPSBLAST alignment for GI: 255764498 and conserved domain: cd01196

>gnl|CDD|29517 cd01196, INT_VanD, VanD integrase, IntD, and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases including those similar to IntD, a putative integrase-like protein, a component of the vanD glycopeptide resistance cluster in Enterococcus faecium BM4339. Members of this CD are predominantly bacterial in origin.. Length = 263
 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 32/278 (11%)

Query: 9   SINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQ 68
           S NT+S+Y R +  +Q FLN KE++       +L+ Y  +L Q      +   ++  I +
Sbjct: 11  SKNTVSSYLRTV--VQYFLNGKELT-----KPNLLEYKGYL-QENFKAQTVNLRLQGINK 62

Query: 69  FYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVR 128
           +  F+ +  L+       +++ +K   L   +       L    K +             
Sbjct: 63  YLEFIGWHDLK----LKFVKVQQKA-FLENVISDADYKFLKTALKADGNE---------E 108

Query: 129 IFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKK 188
            + ++  L ATG RVSEL+ +    +        I  KG K R + +  +       + K
Sbjct: 109 WYFVVWFLAATGARVSELIHIKVEHVQTGY--ADIYSKGGKIRRLYIPKNLRVEALKWLK 166

Query: 189 TCSSMKMTGNDLWLFPSSTKTGH-LSRQVFARDLKALAARAGIQKKNISPHIIRHAFASH 247
               + +    ++L     + G  ++ +  A+ LK  AA+  +  + + PH  RH FA +
Sbjct: 167 ---ELNLDSGYIFL----NRFGKPITARGIAQQLKNYAAKYKMNPRVVYPHSFRHLFAKN 219

Query: 248 LLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLV 285
            L    DL  +  L+GH  I TT+IY      + Q++V
Sbjct: 220 FLAKYNDLALLADLMGHESIETTRIYLRKTATEQQRIV 257