RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] (300 letters) >1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:101-290) Length = 190 Score = 125 bits (315), Expect = 5e-30 Identities = 81/197 (41%), Positives = 121/197 (61%), Gaps = 7/197 (3%) Query: 90 PKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTL 149 PK LPK L + + LL+ I+ Q +R ++E+LYATG+RVSELV L Sbjct: 1 PKLPQRLPKDLSEAQVERLLQAPLID-------QPLELRDKAMLEVLYATGLRVSELVGL 53 Query: 150 SAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKT 209 + ++L + + + GKGNKERLV L A++ L+ Y + + G + + S + Sbjct: 54 TMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRA 113 Query: 210 GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDIST 269 ++RQ F +K A AGI + +SPH++RHAFA+HLL GADLR +Q+LLGH+D+ST Sbjct: 114 QQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLST 173 Query: 270 TQIYTHLLPDKLQKLVQ 286 TQIYTH+ ++L++L Q Sbjct: 174 TQIYTHVATERLRQLHQ 190 >1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Bacteriophage lambda} (A:) Length = 179 Score = 97.9 bits (242), Expect = 1e-21 Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 11/188 (5%) Query: 98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLT 157 L D + + A+ + L +EL TG RV +L + + Sbjct: 2 SRLTADEYLKIYQAAE----------SSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDG 51 Query: 158 ERTMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVF 217 + G K + + M + ++ G + + + + Sbjct: 52 YLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSR 111 Query: 218 ARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLL 277 A+ + + + ++ L E + Q LLGH + + Sbjct: 112 YFMRARKASGLSF-EGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQFRDDR 170 Query: 278 PDKLQKLV 285 + K+ Sbjct: 171 GREWDKIE 178 >1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:167-356) Length = 190 Score = 96.7 bits (239), Expect = 3e-21 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 11/194 (5%) Query: 90 PKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTL 149 K+ + L D + + A+ + L +EL TG RV +L + Sbjct: 4 AAKSKVRRSRLTADEYLKIYQAAE----------SSPCWLRLAMELAVVTGQRVGDLCEM 53 Query: 150 SAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKT 209 + + G K + + M + ++ G + + S+ + Sbjct: 54 KWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGE-TIIASTRRE 112 Query: 210 GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDIST 269 S V ++A A + + + ++ L E + Q LLGH + Sbjct: 113 PLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTM 172 Query: 270 TQIYTHLLPDKLQK 283 + K Sbjct: 173 ASQXRDDRGREWDK 186 >1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:94-283) Length = 190 Score = 96.7 bits (239), Expect = 4e-21 Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 12/198 (6%) Query: 90 PKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTL 149 K+ + L D + + A+ + L EL TG RV +L Sbjct: 4 AAKSKVRRSRLTADEYLKIYQAAESSPC----------WLRLAXELAVVTGQRVGDLCEX 53 Query: 150 SAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKT 209 + + G K + + + ++ G + + S+ + Sbjct: 54 KWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISXKETLDKCKEILGGE-TIIASTRRE 112 Query: 210 GHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDIST 269 S V +A A + + + ++ L E + Q LLGH + Sbjct: 113 PLSSGTVSRYFXRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTX 172 Query: 270 TQI-YTHLLPDKLQKLVQ 286 + + ++ Sbjct: 173 ASQXRDDRGREWDKIEIK 190 >1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} (A:1-49,A:87-170) Length = 133 Score = 88.0 bits (218), Expect = 1e-18 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 213 SRQVFARDLKALAARAGIQK-KNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQ 271 + RA I+ K H++RH FASH + G ++ ++ +LGH+ I T Sbjct: 50 LFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTM 109 Query: 272 IYTHLLPDKLQKLVQDYHPLAKKEK 296 Y H P L+ V+ ++PL+ + Sbjct: 110 RYAHFAPSHLESAVK-FNPLSNPAQ 133 >1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:1-114) Length = 114 Score = 82.3 bits (203), Expect = 7e-17 Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 1/103 (0%) Query: 1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQR 60 M +A S +T + + A + YL +L R L + + Sbjct: 11 MFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQ 70 Query: 61 RKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKD 103 + + + + N L + + + Sbjct: 71 QHLGQLNMLHRRSGLPRPSDSNAVS-LVMRRIRKENVDAGERA 112 >1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:1-100) Length = 100 Score = 79.6 bits (196), Expect = 5e-16 Identities = 26/88 (29%), Positives = 50/88 (56%) Query: 1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQR 60 + E+ + NTL+AY+RDL M +L+++ ++L+ A ++ L + L + +S Sbjct: 12 ALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSA 71 Query: 61 RKISVIRQFYNFLCYEGLRKDNPSDTLE 88 R +S +R+ + +L E R+D+PS L Sbjct: 72 RLLSAVRRLFQYLYREKFREDDPSAHLA 99 >2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:95-144,A:243-320) Length = 128 Score = 77.2 bits (190), Expect = 2e-15 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Query: 212 LSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQ 271 ++ V + ++ A AGI +K ++ H +RH+FA+HLLE GAD+RT+Q LGHTD+ TTQ Sbjct: 50 VNETVLQKAVRRSAQEAGI-EKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ 108 Query: 272 IYTHLLPDKLQKLVQDYHPL 291 IYTH+L ++ L Sbjct: 109 IYTHVLDRGASGVLSPLSRL 128 Score = 46.4 bits (110), Expect = 5e-06 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 13/60 (21%) Query: 90 PKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTL 149 + LP L +D I LLE + L I+LLY +G+R+ E + L Sbjct: 2 SQLERKLPVVLTRDEIRRLLEIV-------------DPKHQLPIKLLYGSGLRLMECMRL 48 >1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:115-310) Length = 196 Score = 71.2 bits (172), Expect = 2e-13 Identities = 19/201 (9%), Positives = 46/201 (22%), Gaps = 28/201 (13%) Query: 98 KTLHKDTIANLLEQAKIEAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLT 157 + + + + + +R + + Y T ++++E+ + ++ T Sbjct: 2 LAFERTDFDQVRSLME------NSDRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISRT 55 Query: 158 ERTMIIQGK-------GNKERLVILSPS--------------ALHALQMYKKTCSSMKMT 196 + ++ LS A + Sbjct: 56 DGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVA 115 Query: 197 GNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHLLEGGADLR 256 S+ + A H R A + G + Sbjct: 116 APSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWS-GHSARVGAARDMARAGVSIP 174 Query: 257 TIQILLGHTDISTTQIYTHLL 277 I G T+++ Y L Sbjct: 175 EIMQAGGWTNVNIVMNYIRNL 195 >2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073} (A:27-117) Length = 91 Score = 69.5 bits (170), Expect = 4e-13 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 1/91 (1%) Query: 11 NTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQFY 70 +T +Y+ L+ I L + + L + R V+ + Sbjct: 2 STWESYETVLRLHVIPTL-GSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAM 60 Query: 71 NFLCYEGLRKDNPSDTLELPKKNHILPKTLH 101 + GL NP++ + P+ H Sbjct: 61 SQARESGLLLQNPTEAAKPPRHPLEHHHHHH 91 >2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579} (A:) Length = 118 Score = 68.8 bits (168), Expect = 8e-13 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKIS 64 + I T K L I L+ ++ H+ +Y+N L L + + I Sbjct: 20 RHSVGIQTAKVLKGYLNSRIIPSL-GNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIK 78 Query: 65 VIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTL 100 VIR L N + +LPK + + Sbjct: 79 VIRNSLEHAIDLELITKNVAAKTKLPKADKEELEHH 114 >2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:1-94) Length = 94 Score = 65.7 bits (160), Expect = 7e-12 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQR-KLVTSSQRRKI 63 R + T+ AY + +F N K S + +L +L+ + K+ T +Q + Sbjct: 15 TRYYAKKTIEAYLHWITRYIHFHNKK--HPSLMGDKEVEEFLTYLAVQGKVATKTQSLAL 72 Query: 64 SVIRQFYNFLCYEGLRKDNP 83 + + Y + L + Sbjct: 73 NSLSFLYKEILKTPLSLEIR 92 >2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435} (A:) Length = 111 Score = 64.6 bits (157), Expect = 2e-11 Identities = 12/99 (12%), Positives = 36/99 (36%), Gaps = 3/99 (3%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKIS 64 ++++ A ++ ++ N K + + +++ +S + + ++ Sbjct: 14 ANDVKVSSVRAREKAIQHAIERFNTK--PIQTIKKHDYQRFVDDISAQY-SKNYVDSIVA 70 Query: 65 VIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKD 103 + + L K PS+ ++ PKK + H Sbjct: 71 STNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVELEHHHH 109 >2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753} (A:) Length = 108 Score = 62.7 bits (152), Expect = 5e-11 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKIS 64 S++ L++YK + + L K SLS + S +N KL ++ + + Sbjct: 17 ADGVSVSQLNSYKNYCRNHLSPLYMK--SLSEILPADIQSIINE---TKLAKNTLKAIRN 71 Query: 65 VIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLH 101 Q + NP+D + +PK H Sbjct: 72 TASQIFRLAIENRAIDFNPADYVRIPKIALEHHHHHH 108 Score = 26.9 bits (59), Expect = 3.7 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 5/83 (6%) Query: 45 YLNHLSQRKLVTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHK-- 102 +L + S + R + L + L + P+D + + + TL Sbjct: 11 FLKSKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPADIQSIINETKLAKNTLKAIR 70 Query: 103 ---DTIANLLEQAKIEAENPAPG 122 I L + + NPA Sbjct: 71 NTASQIFRLAIENRAIDFNPADY 93 >2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage} (A:) Length = 103 Score = 62.3 bits (151), Expect = 8e-11 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 3/88 (3%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKIS 64 R TL Y +K ++ L + L +T + + LN +S + S Sbjct: 16 SRGIKQKTLINYMSKIKAIRRGLPDA--PLEDITTKEIAAMLNGYIDE-GKAASAKLIRS 72 Query: 65 VIRQFYNFLCYEGLRKDNPSDTLELPKK 92 + + EG N K Sbjct: 73 TLSDAFREAIAEGHITTNHVAATRAAKS 100 >2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343} (A:) Length = 112 Score = 61.5 bits (149), Expect = 1e-10 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 3/89 (3%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHL-SQRKLVTSSQRRKI 63 R I T +K +++ + + + + L YL ++ S+ +R + Sbjct: 22 SRRLEIGTFRHHKSCMRKFKEYCEGL--QFHELTEDFLRDYLIYMKKTLCNADSTAQRNL 79 Query: 64 SVIRQFYNFLCYEGLRKDNPSDTLELPKK 92 S I+ + + +G +++P L Sbjct: 80 STIKIYVSAAIKKGYMENDPFKDFGLEHH 108 >2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp} (A:) Length = 110 Score = 60.7 bits (147), Expect = 2e-10 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKIS 64 S +T Y+ K +++ +K L +LN + R+ S Sbjct: 17 LPHVSESTKRHYESAYKHIKDHFRHK--LLKDIKRTEYQKFLNEYGLT-HSYETIRKLNS 73 Query: 65 VIRQFYNFLCYEGLRKDNPSDTLELPKKN 93 IR ++ +EG NP+ EL Sbjct: 74 YIRNAFDDAIHEGYVIKNPTYKAELHASV 102 >1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:75-166) Length = 92 Score = 59.1 bits (143), Expect = 7e-10 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKIS 64 R TL Y +K ++ L + L +T + + LN + +S + S Sbjct: 15 SRGIKQKTLINYMSKIKAIRRGLPDA--PLEDITTKEIAAMLNGY-IDEGKAASAKLIRS 71 Query: 65 VIRQFYNFLCYEGLRKDNP 83 + + EG N Sbjct: 72 TLSDAFREAIAEGHITTNH 90 >1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:1-93) Length = 93 Score = 57.2 bits (138), Expect = 3e-09 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKIS 64 R TL Y +K ++ L + L +T + + LN + +S + S Sbjct: 16 SRGIKQKTLINYXSKIKAIRRGLPDA--PLEDITTKEIAAXLNGY-IDEGKAASAKLIRS 72 Query: 65 VIRQFYNFLCYEGLRKDNP 83 + + EG N Sbjct: 73 TLSDAFREAIAEGHITTNH 91 >2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:) Length = 116 Score = 54.9 bits (132), Expect = 1e-08 Identities = 8/93 (8%), Positives = 28/93 (30%), Gaps = 2/93 (2%) Query: 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRR 61 A + + +++ + + H+ L + +R S Sbjct: 17 FERMIAGRWKHPNIVRSRIEKDIKPAI-GSLKVEDVKPRHIDDVLKAVMKR-GAPSIAND 74 Query: 62 KISVIRQFYNFLCYEGLRKDNPSDTLELPKKNH 94 + +++ +N+ + + NP+ + Sbjct: 75 TLRWLKRMFNYAIKRHIIEYNPAAAFDPGDAGG 107 >2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp} (A:) Length = 121 Score = 53.0 bits (127), Expect = 4e-08 Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 4/106 (3%) Query: 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRR 61 S + S + S R L+ + T+HL++ + + +R Sbjct: 17 HESNKRWSEDHRSRVLRYLELYIFPHI-GSSDIRQLKTSHLLAPIKEVDTS-GKHDVAQR 74 Query: 62 KISVIRQFYNFLCYEGLRKDNPSDTLE--LPKKNHILPKTLHKDTI 105 + + NP+ + L H Sbjct: 75 LQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHHH 120 >2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} (A:) Length = 118 Score = 53.0 bits (127), Expect = 5e-08 Identities = 9/93 (9%), Positives = 28/93 (30%), Gaps = 2/93 (2%) Query: 2 MSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRR 61 +++ S + + L+ ++ T L+ + + ++ R Sbjct: 21 FATKTTWSEDYQRSVWTRLETYLFPDI-GNKDIAELDTGDLLVPIKKI-EKLGYLEIAMR 78 Query: 62 KISVIRQFYNFLCYEGLRKDNPSDTLELPKKNH 94 + + + + NP+ LE + Sbjct: 79 VKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKL 111 >2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12} (A:) Length = 118 Score = 50.0 bits (119), Expect = 4e-07 Identities = 9/94 (9%), Positives = 26/94 (27%), Gaps = 2/94 (2%) Query: 5 ERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKIS 64 ++ S+ + + + + + + L+ + R + Sbjct: 19 KQVWSVGYATELAKMFDDDILPIIGG-LEIQDIEPMQLLEVIRRFEDR-GAMERANKARR 76 Query: 65 VIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPK 98 + + + G K NP+ L K + Sbjct: 77 RCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKN 110 >2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:) Length = 106 Score = 41.8 bits (98), Expect = 1e-04 Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 7/88 (7%) Query: 9 SINTLSAYKRDLKEMQNFLNNK--EISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVI 66 + + +K + +S+ T ++ L+ + ++K T+ R I Sbjct: 20 NTKHADQWTNTIK---TYCGPVIGPLSVQDVDTKLIMKVLDPIWEQKPETA--SRLRGRI 74 Query: 67 RQFYNFLCYEGLRKDNPSDTLELPKKNH 94 ++ G R+ + ++H Sbjct: 75 ESVLDWATVRGYREGDNPARWRGYLEHH 102 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 30.1 bits (67), Expect = 0.38 Identities = 24/157 (15%), Positives = 44/157 (28%), Gaps = 32/157 (20%) Query: 148 TLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKKTCSSMKMTGNDLWLFPSST 207 T A L + R K + + L+PS A Q+ K T + Sbjct: 172 TA-AFALTMLSRVD---ASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS 227 Query: 208 KTGHLSRQVF------ARDLKALAARAGIQKKNISPHIIRHAFASHLLEGG--ADLRTI- 258 + L R + ++I + + L + G I Sbjct: 228 VPKGAKIDAQIVIGTPGT-VMDLMKRRQLDARDI-KVFVLDEADNMLDQQGLGDQSMRIK 285 Query: 259 -------QILLGHTDISTTQIYTHLLPDKLQKLVQDY 288 QI+L S T ++++K + + Sbjct: 286 HLLPRNTQIVL----FSAT------FSERVEKYAERF 312 >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* (A:1-15,A:50-172) Length = 138 Score = 28.1 bits (62), Expect = 1.5 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 3/53 (5%) Query: 218 ARDLKALAARAGIQKKNISPHIIRHAF---ASHLLEGGADLRTIQILLGHTDI 267 DL A+ ++K I + + +Q +G T+ Sbjct: 18 TSDLCHQVAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGAIGATEA 70 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.131 0.369 Gapped Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,058,858 Number of extensions: 87320 Number of successful extensions: 267 Number of sequences better than 10.0: 1 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 39 Length of query: 300 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 212 Effective length of database: 1,981,209 Effective search space: 420016308 Effective search space used: 420016308 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.0 bits)