BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764498|ref|YP_003065000.2| site-specific tyrosine
recombinase XerD [Candidatus Liberibacter asiaticus str. psy62]
(300 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 300
Score = 617 bits (1592), Expect = e-179, Method: Compositional matrix adjust.
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQR 60
MMSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQR
Sbjct: 1 MMSSERASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQR 60
Query: 61 RKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPA 120
RKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPA
Sbjct: 61 RKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPA 120
Query: 121 PGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSAL 180
PGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSAL
Sbjct: 121 PGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSAL 180
Query: 181 HALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII 240
HALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII
Sbjct: 181 HALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHII 240
Query: 241 RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKEKKHYN 300
RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKEKKHYN
Sbjct: 241 RHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAKKEKKHYN 300
>gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
asiaticus str. psy62]
Length = 328
Score = 108 bits (271), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 15/305 (4%)
Query: 5 ERASSINTLSAYKRDLKEMQNFL---NNKEISLSAA---STNHLISYLNHLSQRKLVTSS 58
ER S TL +Y+ D ++ FL ++I++ S + ++++ +K+ S
Sbjct: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
Query: 59 QRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAEN 118
+R +S I+ F +L + ++ + KK++ LP+ L++ L++ + +
Sbjct: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
Query: 119 PAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPS 178
+W R ++ LLY G+R+SE ++L+ + + T+ IQGKG+K R+V L PS
Sbjct: 148 ET--KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
Query: 179 ALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPH 238
A+ Y C L LF + L+ VF R ++ L G+ + + H
Sbjct: 206 VRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263
Query: 239 IIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHL----LPDKLQKLVQDYHP-LAK 293
+RH+FA+HLL G DLR+IQ +LGH +STTQIYT++ D + ++ HP + +
Sbjct: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
Query: 294 KEKKH 298
K+KK+
Sbjct: 324 KDKKN 328
>gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
asiaticus str. psy62]
Length = 67
Score = 65.9 bits (159), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 236 SPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHP-LAKK 294
+ H +RH+FA+HLL G DLR+IQ +LGH+ +STTQIYT++ ++ ++ HP + +K
Sbjct: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63
Query: 295 EKK 297
+KK
Sbjct: 64 DKK 66
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 6 RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRK 53
+++ IN L Y R L Q+ + +S+S NH I + RK
Sbjct: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 22.7 bits (47), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 1 MMSSERASSINTLSAYKRDLKEMQNFLN 28
M +E A LS Y+ + K+MQ+F N
Sbjct: 279 MTITETAIFARNLSLYRDESKKMQSFFN 306
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,397
Number of Sequences: 1233
Number of extensions: 6998
Number of successful extensions: 28
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 10
length of query: 300
length of database: 328,796
effective HSP length: 73
effective length of query: 227
effective length of database: 238,787
effective search space: 54204649
effective search space used: 54204649
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)