HHsearch alignment for GI: 255764499 and conserved domain: TIGR02208
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; InterPro: IPR011921 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A . The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS . The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids . These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. This family consists of MsbB in Escherichia coli and closely related proteins in other species. MsbB is homologous to HtrB (IPR011920 from INTERPRO) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.49 E-value=0.00073 Score=42.40 Aligned_cols=157 Identities=13% Similarity=0.199 Sum_probs=95.2
Q ss_pred CCEEEEEEEECC-----CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHEEECC-----EEEECCCCHHH
Q ss_conf 818997400004-----67069981780120123224541242121342122433101100001-----03421310100
Q gi|255764499|r 59 TTVQIEGVDNIP-----STGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQ-----GMIGVKRNSKN 128 (266)
Q Consensus 59 i~v~v~G~e~l~-----~~~~iiv~NH~S~~D~~~l~~~~~~~~~i~K~el~~~P~~g~~~~~~-----g~i~vdR~~~~ 128 (266)
T Consensus 106 ~R~~~~G~E~~~~~~~~G~~vIllvPH~wAiD~aGl~l~s~g~pm~tMf~~~~N~lfdwl~~~~R~~fGG~~y-~R---~ 181 (307)
T TIGR02208 106 KRVELIGLEHIEEAKAEGKKVILLVPHGWAIDIAGLLLASQGLPMVTMFNNHKNPLFDWLWTRVRSRFGGKVY-AR---E 181 (307)
T ss_pred CHHHHHCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCCCCEECHHHHHHHHHHCCEEH-HH---H
T ss_conf 3123405212799996289639971784053289999974485057541157877110023434642088612-13---4
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CCCC----H---HHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCC
Q ss_conf 000013443344420133023402564358520-0210----0---3567655435945787865202544689863458
Q gi|255764499|r 129 LDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGD-MPIY----K---KGIAHIYESLSVPVIPIVVHAGLFWPRKKFMRYP 200 (266)
Q Consensus 129 ~~~~~~~~~~~~~~~~g~~i~iFPEGTr~~~~~-~~~f----k---~G~f~lA~~~~~pIvPv~i~~~~~~~~~~~~~~~ 200 (266)
T Consensus 182 ~Gi~al~----~~lk~g~~~YYLPDeD~Gp~~SvF~dffaT~KATLP~~GkLa~~~~A~VvP~f~~Y---------n~~t 248 (307)
T TIGR02208 182 AGIKALL----KSLKKGESGYYLPDEDHGPEQSVFVDFFATYKATLPVLGKLAKVSNALVVPVFPAY---------NEKT 248 (307)
T ss_pred HHHHHHH----HHHHCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC---------CCCC
T ss_conf 2048999----99753886130786345868533026401101333666899973385262323011---------6432
Q ss_pred CEEEEEECCCCCC--CCCHHHHHHHHHHHHHHHH
Q ss_conf 5799996488889--8997899999999999999
Q gi|255764499|r 201 GNFKVRVLKPIPA--GIPRKIFFAELQEKMEHAS 232 (266)
Q Consensus 201 g~v~v~~~~pI~~--~~~~~~~~~~l~~~i~~~~ 232 (266)
T Consensus 249 ~kf~~~v~pAm~~~~~~~~e~~A~~mN~evE~~v 282 (307)
T TIGR02208 249 GKFELEVRPAMDDLLSEDPEQEARAMNKEVEAFV 282 (307)
T ss_pred CEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5154466261205566786189999879999872