Query         gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs    172 out of 4029
Neff          7.8 
Searched_HMMs 13730
Date          Wed Jun  1 10:26:49 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764499.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1iuqa_ c.112.1.1 (A:) Glycero  99.9   6E-28 4.4E-32  182.3   8.6  148   66-214   123-313 (367)
  2 d1uf5a_ d.160.1.2 (A:) N-carba  71.3     2.5 0.00018   18.8   4.2   13  172-184   222-234 (303)
  3 d1emsa2 d.160.1.1 (A:10-280) N  56.4     5.2 0.00038   16.9   3.8   43  141-184   172-214 (271)
  4 d1j31a_ d.160.1.2 (A:) Hypothe  46.8     7.4 0.00054   16.0   3.7   39  140-183   157-195 (262)
  5 d1f89a_ d.160.1.1 (A:) hypothe  28.6      15  0.0011   14.2   3.9   44  141-185   180-223 (281)
  6 d1jida_ d.201.1.1 (A:) SRP19 {  19.9      22  0.0016   13.2   7.2   82  144-228     8-108 (114)
  7 d2ffca1 c.1.2.3 (A:20-351) Oro  13.0      32  0.0024   12.2   2.1   35  200-234   297-331 (332)
  8 d1xcoa_ c.77.1.5 (A:) Phosphot   9.7      42  0.0031   11.5   2.0   26  130-155     1-26  (324)
  9 d1vj0a1 b.35.1.2 (A:2-155,A:33   8.5      47  0.0034   11.2   1.1   12  142-153   173-184 (184)
 10 d1ogmx2 b.80.1.10 (X:202-574)    7.7      41   0.003   11.6   0.1   37  117-155     3-39  (373)

No 1  
>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
Probab=99.94  E-value=6e-28  Score=182.31  Aligned_cols=148  Identities=14%  Similarity=0.227  Sum_probs=111.8

Q ss_pred             EEECCC-CEEEEEECCHHHHHHHHHHHHH--------CCCEEEEEECCCCCCCCHHEEECCEEEECCCCHH---------
Q ss_conf             000046-7069981780120123224541--------2421213421224331011000010342131010---------
Q gi|255764499|r   66 VDNIPS-TGCIIAIKHQSSWDTFYFLTCI--------QDPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSK---------  127 (266)
Q Consensus        66 ~e~l~~-~~~iiv~NH~S~~D~~~l~~~~--------~~~~~i~K~el~~~P~~g~~~~~~g~i~vdR~~~---------  127 (266)
                      .|++++ +++|++|||||++|++++..++        .+..|++|+++++.|++|+++...|+|+|+|++.         
T Consensus       123 ~Ekl~~g~nVIlvSNHqS~~D~~il~~ll~~~~~~l~r~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~  202 (367)
T d1iuqa_         123 EEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTE  202 (367)
T ss_dssp             HHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHH
T ss_pred             HHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCC
T ss_conf             99860799779987885400389999998512656210338985455622577899997488789954654445631010


Q ss_pred             ---HHHHHHHHHHHHHHHHCC-CEEEEECCCCCCC----CCCC--CCCHHHH----HHHHHHCCCE--EEEEEEEEEEEC
Q ss_conf             ---000001344334442013-3023402564358----5200--2100356----7655435945--787865202544
Q gi|255764499|r  128 ---NLDMKSIINRAKKAVMDN-RQLIIYPEGTRRS----PGDM--PIYKKGI----AHIYESLSVP--VIPIVVHAGLFW  191 (266)
Q Consensus       128 ---~~~~~~~~~~~~~~~~~g-~~i~iFPEGTr~~----~~~~--~~fk~G~----f~lA~~~~~p--IvPv~i~~~~~~  191 (266)
                         +++. ..++.+.+.+++| .+++|||||||++    +|.+  .+|++|+    +++|..+++|  |+||++.++...
T Consensus       203 ~~~~~~~-~al~~~~~lL~~Gg~~v~IfPEGTRsr~~~~dg~l~p~~F~~~~~~~~~~LA~~sgvP~hV~Pvai~~~d~~  281 (367)
T d1iuqa_         203 TKRKANT-RSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIM  281 (367)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGS
T ss_pred             HHHHHHH-HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHCCCCC
T ss_conf             0223326-889999998616875999945676467666666505665575505899999855799956856044133425


Q ss_pred             CCC-C--------CCCCCCEEEEEECCCCCCC
Q ss_conf             689-8--------6345857999964888898
Q gi|255764499|r  192 PRK-K--------FMRYPGNFKVRVLKPIPAG  214 (266)
Q Consensus       192 ~~~-~--------~~~~~g~v~v~~~~pI~~~  214 (266)
                      +.. .        ...+.+.+.+.+|+||+..
T Consensus       282 pP~~~v~~~ige~R~~~~~~V~i~~G~pId~~  313 (367)
T d1iuqa_         282 PPPSQVEIEIGEKRVIAFNGAGLSVAPEISFE  313 (367)
T ss_dssp             CCC----------CCCCCBCCEEEECCCCCHH
T ss_pred             CCCCCCCCCHHHCCCCCCCCEEEEECCCCCHH
T ss_conf             88754332000103667786148867973566


No 2  
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}
Probab=71.30  E-value=2.5  Score=18.75  Aligned_cols=13  Identities=0%  Similarity=-0.560  Sum_probs=8.5

Q ss_pred             HHHHCCCEEEEEE
Q ss_conf             5543594578786
Q gi|255764499|r  172 IYESLSVPVIPIV  184 (266)
Q Consensus       172 lA~~~~~pIvPv~  184 (266)
                      -|.+++++++-.-
T Consensus       222 rA~en~~~vv~~n  234 (303)
T d1uf5a_         222 GSYQNGAWSAAAG  234 (303)
T ss_dssp             HHHHHTCEEEEEE
T ss_pred             HHHCCCCEEEECC
T ss_conf             5430553143136


No 3  
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=56.41  E-value=5.2  Score=16.91  Aligned_cols=43  Identities=9%  Similarity=0.069  Sum_probs=24.0

Q ss_pred             HHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             42013302340256435852002100356765543594578786
Q gi|255764499|r  141 AVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIV  184 (266)
Q Consensus       141 ~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~  184 (266)
                      ...+|..+++.|-+.... ......+...-..|.+.+++++-.-
T Consensus       172 ~~~~ga~~i~~p~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~n  214 (271)
T d1emsa2         172 NRKRGAQLLSFPSAFTLN-TGLAHWETLLRARAIENQCYVVAAA  214 (271)
T ss_dssp             HHHTTCSEEECCBCCCHH-HHHHHHHHHHHHHHHHHTCEEEECB
T ss_pred             HHHHCCCEEEECCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             986057289863535554-3204679999987763044300011


No 4  
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=46.84  E-value=7.4  Score=15.99  Aligned_cols=39  Identities=10%  Similarity=0.003  Sum_probs=24.2

Q ss_pred             HHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             44201330234025643585200210035676554359457878
Q gi|255764499|r  140 KAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPI  183 (266)
Q Consensus       140 ~~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv  183 (266)
                      ....+|-.+++.|-.+........     .-.-|.+++++++=.
T Consensus       157 ~~~~~ga~lil~p~~~~~~~~~~~-----~~~rA~en~~~vv~~  195 (262)
T d1j31a_         157 TLALKGAEIIAHPANLVMPYAPRA-----MPIRALENRVYTITA  195 (262)
T ss_dssp             HHHHTTCSEEEEECCCCSSCHHHH-----HHHHHHHHTCEEEEE
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHH-----HHHHHHCCCCEEEEE
T ss_conf             888740334567733346420466-----655654064328997


No 5  
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.62  E-value=15  Score=14.24  Aligned_cols=44  Identities=14%  Similarity=0.039  Sum_probs=22.5

Q ss_pred             HHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf             420133023402564358520021003567655435945787865
Q gi|255764499|r  141 AVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVV  185 (266)
Q Consensus       141 ~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~i  185 (266)
                      ...+|..+++.|=........ ...+.-+-.-|.+.+++++-+..
T Consensus       180 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~  223 (281)
T d1f89a_         180 SARKGAFAMIYPSAFNTVTGP-LHWHLLARSRAVDNQVYVMLCSP  223 (281)
T ss_dssp             HHHTTEEEEEEECCCBTTHHH-HHHHHHHHHHHHHHTSEEEEECC
T ss_pred             HHCCCCCCEEEEECCCCCCCC-CCCCCHHHHHCCCCCCCCEEEEE
T ss_conf             001355532675244555441-00022022211102433301233


No 6  
>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.91  E-value=22  Score=13.23  Aligned_cols=82  Identities=20%  Similarity=0.312  Sum_probs=46.7

Q ss_pred             CCCEEEEEC----------CCCCCCCCC--CCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCC--CCCCCEEEEEEC-
Q ss_conf             133023402----------564358520--02100356765543594578786520254468986--345857999964-
Q gi|255764499|r  144 DNRQLIIYP----------EGTRRSPGD--MPIYKKGIAHIYESLSVPVIPIVVHAGLFWPRKKF--MRYPGNFKVRVL-  208 (266)
Q Consensus       144 ~g~~i~iFP----------EGTr~~~~~--~~~fk~G~f~lA~~~~~pIvPv~i~~~~~~~~~~~--~~~~g~v~v~~~-  208 (266)
                      ...+++|||          ||.|.....  -.|--.-....+.+.|++.+   +.....+|+...  +...|+|.|.+- 
T Consensus         8 ~~rw~iIyP~Y~Ds~~tr~eGRRv~k~~aV~~P~~~EI~~a~~~lgl~~~---~E~~K~~Pr~~~~~~~~~GRVrV~lk~   84 (114)
T d1jida_           8 QDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVF---LEKNKMYSREWNRDVQYRGRVRVQLKQ   84 (114)
T ss_dssp             GGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEE---EETTCCCTTCCCCCGGGCCEEEECCBC
T ss_pred             CCCCEEECCCCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCEE---EECCCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf             65678977720158787541574588896569899999999998599778---742777884534433248658998757


Q ss_pred             ---CCCCCCC-CHHHHHHHHHHHH
Q ss_conf             ---8888989-9789999999999
Q gi|255764499|r  209 ---KPIPAGI-PRKIFFAELQEKM  228 (266)
Q Consensus       209 ---~pI~~~~-~~~~~~~~l~~~i  228 (266)
                         .++.+.. ++++.+..+.+.|
T Consensus        85 ~~g~~~~~~~~tK~~Ll~~Ia~~I  108 (114)
T d1jida_          85 EDGSLCLVQFPSRKSVMLYAAEMI  108 (114)
T ss_dssp             TTSCBSCTTCSSHHHHHHHHHHHG
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             998864777788999999999987


No 7  
>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}
Probab=12.99  E-value=32  Score=12.18  Aligned_cols=35  Identities=9%  Similarity=0.045  Sum_probs=25.3

Q ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             85799996488889899789999999999999999
Q gi|255764499|r  200 PGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNN  234 (266)
Q Consensus       200 ~g~v~v~~~~pI~~~~~~~~~~~~l~~~i~~~~~~  234 (266)
                      .|...+.+|.||.-..+..+..+++.+.+++++.+
T Consensus       297 ~ga~~IvvGR~I~~A~dp~~aa~~i~~ei~e~l~e  331 (332)
T d2ffca1         297 YEKVLINVGRAITKSGSPQQAAREYHQQIKEVLAE  331 (332)
T ss_dssp             GGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             69559996911167999899999999999999961


No 8  
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis [TaxId: 1423]}
Probab=9.67  E-value=42  Score=11.52  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             00013443344420133023402564
Q gi|255764499|r  130 DMKSIINRAKKAVMDNRQLIIYPEGT  155 (266)
Q Consensus       130 ~~~~~~~~~~~~~~~g~~i~iFPEGT  155 (266)
                      .+.++++...+..+....=++||||.
T Consensus         1 ~m~~l~~~l~~kak~~~krIV~~Ege   26 (324)
T d1xcoa_           1 GMADLFSTVQEKVAGKDVKIVFPEGL   26 (324)
T ss_dssp             CHHHHHHHHHHHHTTSCCEEEESCTT
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             90899999999985399989970879


No 9  
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}
Probab=8.48  E-value=47  Score=11.23  Aligned_cols=12  Identities=33%  Similarity=0.739  Sum_probs=0.0

Q ss_pred             HHCCCEEEEECC
Q ss_conf             201330234025
Q gi|255764499|r  142 VMDNRQLIIYPE  153 (266)
Q Consensus       142 ~~~g~~i~iFPE  153 (266)
                      ++.|..++||||
T Consensus       173 ~~~G~~VlI~~~  184 (184)
T d1vj0a1         173 SREALKVILYPE  184 (184)
T ss_dssp             HTSCSCEEEECC
T ss_pred             CCCCCEEEEEEC
T ss_conf             996998999229


No 10 
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}
Probab=7.75  E-value=41  Score=11.56  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=0.0

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             103421310100000013443344420133023402564
Q gi|255764499|r  117 QGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGT  155 (266)
Q Consensus       117 ~g~i~vdR~~~~~~~~~~~~~~~~~~~~g~~i~iFPEGT  155 (266)
                      .|++|=+-.+..++++.....+..  ..+..++.||+||
T Consensus         3 ~ga~p~~~~d~t~a~~~a~~~~~~--~~~~~vvy~PpG~   39 (373)
T d1ogmx2           3 SGMIPHMTPDNTQTMTPGPINNGD--WGAKSILYFPPGV   39 (373)
T ss_dssp             GGGSCCCCTTTEEECCSEEECTTT--TCSSSEEEECSEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCC--CCCCCEEEECCCE
T ss_conf             886589898846875310465244--6898889989946


Done!