Query gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 266 No_of_seqs 172 out of 4029 Neff 7.8 Searched_HMMs 13730 Date Wed Jun 1 10:26:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764499.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1iuqa_ c.112.1.1 (A:) Glycero 99.9 6E-28 4.4E-32 182.3 8.6 148 66-214 123-313 (367) 2 d1uf5a_ d.160.1.2 (A:) N-carba 71.3 2.5 0.00018 18.8 4.2 13 172-184 222-234 (303) 3 d1emsa2 d.160.1.1 (A:10-280) N 56.4 5.2 0.00038 16.9 3.8 43 141-184 172-214 (271) 4 d1j31a_ d.160.1.2 (A:) Hypothe 46.8 7.4 0.00054 16.0 3.7 39 140-183 157-195 (262) 5 d1f89a_ d.160.1.1 (A:) hypothe 28.6 15 0.0011 14.2 3.9 44 141-185 180-223 (281) 6 d1jida_ d.201.1.1 (A:) SRP19 { 19.9 22 0.0016 13.2 7.2 82 144-228 8-108 (114) 7 d2ffca1 c.1.2.3 (A:20-351) Oro 13.0 32 0.0024 12.2 2.1 35 200-234 297-331 (332) 8 d1xcoa_ c.77.1.5 (A:) Phosphot 9.7 42 0.0031 11.5 2.0 26 130-155 1-26 (324) 9 d1vj0a1 b.35.1.2 (A:2-155,A:33 8.5 47 0.0034 11.2 1.1 12 142-153 173-184 (184) 10 d1ogmx2 b.80.1.10 (X:202-574) 7.7 41 0.003 11.6 0.1 37 117-155 3-39 (373) No 1 >d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]} Probab=99.94 E-value=6e-28 Score=182.31 Aligned_cols=148 Identities=14% Similarity=0.227 Sum_probs=111.8 Q ss_pred EEECCC-CEEEEEECCHHHHHHHHHHHHH--------CCCEEEEEECCCCCCCCHHEEECCEEEECCCCHH--------- Q ss_conf 000046-7069981780120123224541--------2421213421224331011000010342131010--------- Q gi|255764499|r 66 VDNIPS-TGCIIAIKHQSSWDTFYFLTCI--------QDPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSK--------- 127 (266) Q Consensus 66 ~e~l~~-~~~iiv~NH~S~~D~~~l~~~~--------~~~~~i~K~el~~~P~~g~~~~~~g~i~vdR~~~--------- 127 (266) .|++++ +++|++|||||++|++++..++ .+..|++|+++++.|++|+++...|+|+|+|++. T Consensus 123 ~Ekl~~g~nVIlvSNHqS~~D~~il~~ll~~~~~~l~r~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~ 202 (367) T d1iuqa_ 123 EEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTE 202 (367) T ss_dssp HHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHH T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCC T ss_conf 99860799779987885400389999998512656210338985455622577899997488789954654445631010 Q ss_pred ---HHHHHHHHHHHHHHHHCC-CEEEEECCCCCCC----CCCC--CCCHHHH----HHHHHHCCCE--EEEEEEEEEEEC Q ss_conf ---000001344334442013-3023402564358----5200--2100356----7655435945--787865202544 Q gi|255764499|r 128 ---NLDMKSIINRAKKAVMDN-RQLIIYPEGTRRS----PGDM--PIYKKGI----AHIYESLSVP--VIPIVVHAGLFW 191 (266) Q Consensus 128 ---~~~~~~~~~~~~~~~~~g-~~i~iFPEGTr~~----~~~~--~~fk~G~----f~lA~~~~~p--IvPv~i~~~~~~ 191 (266) +++. ..++.+.+.+++| .+++|||||||++ +|.+ .+|++|+ +++|..+++| |+||++.++... T Consensus 203 ~~~~~~~-~al~~~~~lL~~Gg~~v~IfPEGTRsr~~~~dg~l~p~~F~~~~~~~~~~LA~~sgvP~hV~Pvai~~~d~~ 281 (367) T d1iuqa_ 203 TKRKANT-RSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIM 281 (367) T ss_dssp HHHHHHH-HHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGS T ss_pred HHHHHHH-HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHCCCCC T ss_conf 0223326-889999998616875999945676467666666505665575505899999855799956856044133425 Q ss_pred CCC-C--------CCCCCCEEEEEECCCCCCC Q ss_conf 689-8--------6345857999964888898 Q gi|255764499|r 192 PRK-K--------FMRYPGNFKVRVLKPIPAG 214 (266) Q Consensus 192 ~~~-~--------~~~~~g~v~v~~~~pI~~~ 214 (266) +.. . ...+.+.+.+.+|+||+.. T Consensus 282 pP~~~v~~~ige~R~~~~~~V~i~~G~pId~~ 313 (367) T d1iuqa_ 282 PPPSQVEIEIGEKRVIAFNGAGLSVAPEISFE 313 (367) T ss_dssp CCC----------CCCCCBCCEEEECCCCCHH T ss_pred CCCCCCCCCHHHCCCCCCCCEEEEECCCCCHH T ss_conf 88754332000103667786148867973566 No 2 >d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Probab=71.30 E-value=2.5 Score=18.75 Aligned_cols=13 Identities=0% Similarity=-0.560 Sum_probs=8.5 Q ss_pred HHHHCCCEEEEEE Q ss_conf 5543594578786 Q gi|255764499|r 172 IYESLSVPVIPIV 184 (266) Q Consensus 172 lA~~~~~pIvPv~ 184 (266) -|.+++++++-.- T Consensus 222 rA~en~~~vv~~n 234 (303) T d1uf5a_ 222 GSYQNGAWSAAAG 234 (303) T ss_dssp HHHHHTCEEEEEE T ss_pred HHHCCCCEEEECC T ss_conf 5430553143136 No 3 >d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Probab=56.41 E-value=5.2 Score=16.91 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=24.0 Q ss_pred HHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 42013302340256435852002100356765543594578786 Q gi|255764499|r 141 AVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIV 184 (266) Q Consensus 141 ~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~ 184 (266) ...+|..+++.|-+.... ......+...-..|.+.+++++-.- T Consensus 172 ~~~~ga~~i~~p~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~n 214 (271) T d1emsa2 172 NRKRGAQLLSFPSAFTLN-TGLAHWETLLRARAIENQCYVVAAA 214 (271) T ss_dssp HHHTTCSEEECCBCCCHH-HHHHHHHHHHHHHHHHHTCEEEECB T ss_pred HHHHCCCEEEECCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 986057289863535554-3204679999987763044300011 No 4 >d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=46.84 E-value=7.4 Score=15.99 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=24.2 Q ss_pred HHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 44201330234025643585200210035676554359457878 Q gi|255764499|r 140 KAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPI 183 (266) Q Consensus 140 ~~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv 183 (266) ....+|-.+++.|-.+........ .-.-|.+++++++=. T Consensus 157 ~~~~~ga~lil~p~~~~~~~~~~~-----~~~rA~en~~~vv~~ 195 (262) T d1j31a_ 157 TLALKGAEIIAHPANLVMPYAPRA-----MPIRALENRVYTITA 195 (262) T ss_dssp HHHHTTCSEEEEECCCCSSCHHHH-----HHHHHHHHTCEEEEE T ss_pred HHHHHCCCCCCCCCCCCCCCCHHH-----HHHHHHCCCCEEEEE T ss_conf 888740334567733346420466-----655654064328997 No 5 >d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=28.62 E-value=15 Score=14.24 Aligned_cols=44 Identities=14% Similarity=0.039 Sum_probs=22.5 Q ss_pred HHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE Q ss_conf 420133023402564358520021003567655435945787865 Q gi|255764499|r 141 AVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVV 185 (266) Q Consensus 141 ~~~~g~~i~iFPEGTr~~~~~~~~fk~G~f~lA~~~~~pIvPv~i 185 (266) ...+|..+++.|=........ ...+.-+-.-|.+.+++++-+.. T Consensus 180 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~ 223 (281) T d1f89a_ 180 SARKGAFAMIYPSAFNTVTGP-LHWHLLARSRAVDNQVYVMLCSP 223 (281) T ss_dssp HHHTTEEEEEEECCCBTTHHH-HHHHHHHHHHHHHHTSEEEEECC T ss_pred HHCCCCCCEEEEECCCCCCCC-CCCCCHHHHHCCCCCCCCEEEEE T ss_conf 001355532675244555441-00022022211102433301233 No 6 >d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]} Probab=19.91 E-value=22 Score=13.23 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=46.7 Q ss_pred CCCEEEEEC----------CCCCCCCCC--CCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCC--CCCCCEEEEEEC- Q ss_conf 133023402----------564358520--02100356765543594578786520254468986--345857999964- Q gi|255764499|r 144 DNRQLIIYP----------EGTRRSPGD--MPIYKKGIAHIYESLSVPVIPIVVHAGLFWPRKKF--MRYPGNFKVRVL- 208 (266) Q Consensus 144 ~g~~i~iFP----------EGTr~~~~~--~~~fk~G~f~lA~~~~~pIvPv~i~~~~~~~~~~~--~~~~g~v~v~~~- 208 (266) ...+++||| ||.|..... -.|--.-....+.+.|++.+ +.....+|+... +...|+|.|.+- T Consensus 8 ~~rw~iIyP~Y~Ds~~tr~eGRRv~k~~aV~~P~~~EI~~a~~~lgl~~~---~E~~K~~Pr~~~~~~~~~GRVrV~lk~ 84 (114) T d1jida_ 8 QDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVF---LEKNKMYSREWNRDVQYRGRVRVQLKQ 84 (114) T ss_dssp GGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEE---EETTCCCTTCCCCCGGGCCEEEECCBC T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCEE---EECCCCCCCCCCCCCCCCCEEEEEEEC T ss_conf 65678977720158787541574588896569899999999998599778---742777884534433248658998757 Q ss_pred ---CCCCCCC-CHHHHHHHHHHHH Q ss_conf ---8888989-9789999999999 Q gi|255764499|r 209 ---KPIPAGI-PRKIFFAELQEKM 228 (266) Q Consensus 209 ---~pI~~~~-~~~~~~~~l~~~i 228 (266) .++.+.. ++++.+..+.+.| T Consensus 85 ~~g~~~~~~~~tK~~Ll~~Ia~~I 108 (114) T d1jida_ 85 EDGSLCLVQFPSRKSVMLYAAEMI 108 (114) T ss_dssp TTSCBSCTTCSSHHHHHHHHHHHG T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 998864777788999999999987 No 7 >d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]} Probab=12.99 E-value=32 Score=12.18 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=25.3 Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 85799996488889899789999999999999999 Q gi|255764499|r 200 PGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNN 234 (266) Q Consensus 200 ~g~v~v~~~~pI~~~~~~~~~~~~l~~~i~~~~~~ 234 (266) .|...+.+|.||.-..+..+..+++.+.+++++.+ T Consensus 297 ~ga~~IvvGR~I~~A~dp~~aa~~i~~ei~e~l~e 331 (332) T d2ffca1 297 YEKVLINVGRAITKSGSPQQAAREYHQQIKEVLAE 331 (332) T ss_dssp GGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 69559996911167999899999999999999961 No 8 >d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis [TaxId: 1423]} Probab=9.67 E-value=42 Score=11.52 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 00013443344420133023402564 Q gi|255764499|r 130 DMKSIINRAKKAVMDNRQLIIYPEGT 155 (266) Q Consensus 130 ~~~~~~~~~~~~~~~g~~i~iFPEGT 155 (266) .+.++++...+..+....=++||||. T Consensus 1 ~m~~l~~~l~~kak~~~krIV~~Ege 26 (324) T d1xcoa_ 1 GMADLFSTVQEKVAGKDVKIVFPEGL 26 (324) T ss_dssp CHHHHHHHHHHHHTTSCCEEEESCTT T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 90899999999985399989970879 No 9 >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Probab=8.48 E-value=47 Score=11.23 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=0.0 Q ss_pred HHCCCEEEEECC Q ss_conf 201330234025 Q gi|255764499|r 142 VMDNRQLIIYPE 153 (266) Q Consensus 142 ~~~g~~i~iFPE 153 (266) ++.|..++|||| T Consensus 173 ~~~G~~VlI~~~ 184 (184) T d1vj0a1 173 SREALKVILYPE 184 (184) T ss_dssp HTSCSCEEEECC T ss_pred CCCCCEEEEEEC T ss_conf 996998999229 No 10 >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Probab=7.75 E-value=41 Score=11.56 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=0.0 Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 103421310100000013443344420133023402564 Q gi|255764499|r 117 QGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGT 155 (266) Q Consensus 117 ~g~i~vdR~~~~~~~~~~~~~~~~~~~~g~~i~iFPEGT 155 (266) .|++|=+-.+..++++.....+.. ..+..++.||+|| T Consensus 3 ~ga~p~~~~d~t~a~~~a~~~~~~--~~~~~vvy~PpG~ 39 (373) T d1ogmx2 3 SGMIPHMTPDNTQTMTPGPINNGD--WGAKSILYFPPGV 39 (373) T ss_dssp GGGSCCCCTTTEEECCSEEECTTT--TCSSSEEEECSEE T ss_pred CCCCCCCCCCCHHHHHHHHHHHCC--CCCCCEEEECCCE T ss_conf 886589898846875310465244--6898889989946 Done!