RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 126 bits (318), Expect = 7e-30
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
Query: 61 VQIEGVDNIPSTG-CIIAIKHQSSWDTFYFLTCIQDPI-FILKHTVFYIPIIGFYCFKQG 118
V++EG++N+P G II HQS D + PI F+ K +F IP +G+ G
Sbjct: 12 VRVEGLENLPPKGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIPFLGWLLRLLG 71
Query: 119 MIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSV 178
I + R + +++ A +A+ + ++I+PEGTR G++ +K G + + V
Sbjct: 72 AIPIDRGNGRSAREAL-REAIEALKEGESVVIFPEGTRSRDGELLPFKSGAFRLAKEAGV 130
Query: 179 PVIPIVVH-AGLFWPRKKFMRYPGNFKVRVLKPIPA--GIPRKIFFAELQEKME 229
P++P+ + P+ K + PG VR+ +PIP + EL+EK+
Sbjct: 131 PIVPVAISGTWGSLPKGKKLPRPGRVTVRIGEPIPPEGLELAEEDRKELREKVR 184
>gnl|CDD|30553 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 115 bits (287), Expect = 2e-26
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 10/238 (4%)
Query: 10 IFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTTVQIEGVDNI 69
+ I + + ++ L L + + ++W LLL + V++EG++N+
Sbjct: 1 LRLALLLILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEGLENL 60
Query: 70 PSTG-CIIAIKHQSSWDTFYFLTCIQDPI---FILKHTVFYIPIIGFYCFKQGMIGVKRN 125
P G ++ HQS D + F+ K +F +P++G+ G I V R
Sbjct: 61 PKGGPALVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDRE 120
Query: 126 SKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGD-MPIYKKGIAHIYESLSVPVIPIV 184
+ + + + + R L+I+PEGTR G+ + +K+G A + VP++P+
Sbjct: 121 NPDDET--LRAAVARLKAGGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVA 178
Query: 185 VHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETIRD 242
+ G KVR+ PI + EL E +E + +LLE +
Sbjct: 179 IVGAEELF---PSLKKGKVKVRIGPPIDISALPEPLLPELAEAVEQLARPILLELLPR 233
>gnl|CDD|38059 KOG2848, KOG2848, KOG2848, 1-acyl-sn-glycerol-3-phosphate
acyltransferase [Lipid transport and metabolism].
Length = 276
Score = 104 bits (260), Expect = 3e-23
Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 9/249 (3%)
Query: 5 FIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYITKTTVQIE 64
+ R + + I S + LL + +IAK W H +KY+ ++
Sbjct: 27 YFRCAFYGAICSFYGVIASPVCLL--RGGRSVENHFIAKLWFHS----MKYLLGLRFEVR 80
Query: 65 GVDNIPSTG-CIIAIKHQSSWDTFYFLTCI-QDPIFILKHTVFYIPIIGFYCFKQGMIGV 122
G +N+P + +I HQSS D + ++ + I K ++FY+PI G + G++ +
Sbjct: 81 GEENLPKSKPAVIVSNHQSSLDILGMGSIWPKNCVVIAKRSLFYVPIFGLAMYLSGVVFI 140
Query: 123 KRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIP 182
R+ + + ++ A++ +NR++ ++PEGTR G + +KKG H+ VP++P
Sbjct: 141 DRSRREKAIDTLDKCAERMKKENRKVWVFPEGTRNKEGRLLPFKKGAFHLAVQAQVPIVP 200
Query: 183 IVVHA-GLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNLLLETIR 241
+V + G F+ K+ + GN VRVL PIP K L ++ A E
Sbjct: 201 VVFSSYGDFYSTKEKVFNSGNVIVRVLPPIPTEGLTKDDVDVLSDECRSAMLETFKEISA 260
Query: 242 DNPQLYIPA 250
+
Sbjct: 261 EAAVRNATL 269
>gnl|CDD|110550 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 132
Score = 68.1 bits (167), Expect = 2e-12
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 61 VQIEGVDNIPS-TGCIIAIKHQSSWDTFYFLTCI-----QDPIFILKHTVFYIPIIGFYC 114
V++ G++N+P I+ HQS D L+ + + P+F+ K +F +P++G+
Sbjct: 2 VEVHGLENLPRKGPAIVVANHQSWLD-PLVLSLLLYKRPRRPVFVAKDELFTVPLLGWLM 60
Query: 115 FKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLI-IYPEGTRRSPGDMPIYKKGIAHIY 173
G I + R S + + ++ +L+ I+PEGTR G++ +KKG +
Sbjct: 61 RLLGHIFIDRKKAKDARAS-LRELVELLLRAGKLVVIFPEGTRSRNGELLPFKKGAFRLA 119
Query: 174 ESLSVPVIPIVV 185
VP++P+ +
Sbjct: 120 REAGVPIVPVAI 131
>gnl|CDD|36718 KOG1505, KOG1505, KOG1505, Lysophosphatidic acid acyltransferase
LPAAT and related acyltransferases [Lipid transport and
metabolism].
Length = 346
Score = 57.6 bits (139), Expect = 3e-09
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%)
Query: 3 MIFIRSLIFNIFFFIHIFIVSMIVLLLCCFITRKQC--LYIAKKWAHVNQLLLKYITKTT 60
+ + L+ + +VS IVL L + + LY + +
Sbjct: 1 LFLLSGLVIAFIQLVVFVLVSAIVLQLFSKLLWRLLYKLYSGLLLFLASWYAGSEVNGYG 60
Query: 61 VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDP------IFILKHTVFYIPIIGFYC 114
+ G +IA HQS D Y T Q +LK ++ Y+PI G+
Sbjct: 61 DDVTGDKYGKERALLIA-NHQSEVDWLYLWTYAQRKGVLGNVKIVLKKSLKYLPIFGWGM 119
Query: 115 FKQGMIGVKRNSKNLD--MKSIINRAKKAVMDNRQLIIYPEGTRRSP 159
+ G I ++RN + + + S++ K + D L+++PEGTR +
Sbjct: 120 WFHGFIFLERNWEKDEKTLISLLKHLKDSP-DPYWLLLFPEGTRFTE 165
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 51.4 bits (124), Expect = 2e-07
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 75 IIAIKHQSSWDTFYFLTCI----QDPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSKN-- 128
+I H S+WD L F+ KH++F P +G + G I V R+
Sbjct: 24 VIGAPHTSNWDFVLGLLAAFALGLKISFLGKHSLFKPP-LGPFMRWLGGIPVDRSRAGGL 82
Query: 129 LD-MKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHA 187
++ + R ++ V L I PEGTR K G HI VP++ + +
Sbjct: 83 VEQVVEEFRRREEFV-----LAIAPEGTRSKVDKW---KTGFYHIARGAGVPILLVYLD- 133
Query: 188 GLFWPRK 194
+ RK
Sbjct: 134 ---YKRK 137
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 50.7 bits (122), Expect = 4e-07
Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 29/154 (18%)
Query: 51 LLLKYITKTTVQIEGVDNIPSTG-CIIAIKHQSSWDTFYFLTCIQDPI------FILKHT 103
L ++++ V + G + +I H+S D +LK +
Sbjct: 2 FLFEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDS 61
Query: 104 VFYIPIIGFYCFKQGMIGVKRNSKNLDMKSIINRAK--KAVMDNRQLIIYPEGTRRSP-- 159
+ Y P+ G+ I +KR + D K+I + K K + L+I+PEGTR +
Sbjct: 62 LKYPPLGGWGWQLGEFIFLKRKWEK-DEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEK 120
Query: 160 ----------GDMPIYK-------KGIAHIYESL 176
+P K KG I E+L
Sbjct: 121 KERSQEFAEKNGLPPLKHVLLPRTKGFVAILETL 154
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 49.3 bits (118), Expect = 1e-06
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 23/173 (13%)
Query: 51 LLLKYITKTTVQIEGVDNIPST-GCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFY--- 106
LLL + ++++G P + H S WD L + + + V+
Sbjct: 4 LLLNFFGFVRLEVKGPPPPPGGGPVLFVSNHSSWWD-GLILFLLLERGL--RRDVYGLMD 60
Query: 107 ---IPIIGFYCFKQGMIGVKRNS---KNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPG 160
+ F+ + G V R+S +K + K + I+PEGTR
Sbjct: 61 EELLERYPFF-TRLGAFSVDRDSPRSAAKSLKYVARLLSKP---GSVVWIFPEGTRTRRD 116
Query: 161 DMPI-YKKGIAHIYESLSVPVIPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIP 212
P+ +K G+AH+ E VP++P+ + F ++F VR+ PIP
Sbjct: 117 KRPLQFKPGVAHLAEKAGVPIVPVALR-YTFELFEQF----PEIFVRIGPPIP 164
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 48.8 bits (117), Expect = 2e-06
Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 17/178 (9%)
Query: 51 LLLKYITKT---TVQIEGVDNIPSTG-CIIAIKHQSSW-DTF-YFLTCIQDPIFILKHTV 104
LL + I + + + G +N+P G I H ++ D T + F+ K +
Sbjct: 3 LLSRVILRIYFRRITVVGRENVPKDGPVIFLGNHPNALIDPLLLAATLRRPVRFLAKADL 62
Query: 105 FYIPIIGFYCFKQGMIGVKRNSKNLD-MKSIINRAK------KAVMDNRQLIIYPEGTRR 157
F P+IG+ G I V R I+ A +A+ + I+PEG
Sbjct: 63 FKNPLIGWLLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSH 122
Query: 158 SPGDMPIYKKGIAHI-YESLSVPVIPI-VVHAGLFWPRKKFMRYPGNFKVRVLKPIPA 213
+ K G A + E+L + +V GL + K R+ V KPI
Sbjct: 123 DRPRLLPLKAGAARMALEALEAGQKDVKIVPVGLNYEDKS--RFRSRVLVEFGKPISV 178
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 43.0 bits (102), Expect = 8e-05
Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 27/205 (13%)
Query: 62 QIEGVDNIPSTGCIIAIKHQS--SWDTFYFLTCIQD------PIFILKHTVFYIPIIGFY 113
++ G++NIP G + + D P + H +F +P +
Sbjct: 9 EVRGLENIPDEGPALLVHPHGGLPIDGALLAAAFLLLFPGRLPRALADHFLFPLPGLRDL 68
Query: 114 CFKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTR----RSPGDMPIY---K 166
+ G + R + + + + ++I+P G R + + +
Sbjct: 69 LRRLGAVPGSREN-----------CVRLLREGELVLIFPGGAREALKSKREEYYLLWKKR 117
Query: 167 KGIAHIYESLSVPVIP-IVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQ 225
KG A + P++P + P ++ L P+P +P F E
Sbjct: 118 KGFARLALRAGAPIVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRRLPLYPVFGEPI 177
Query: 226 EKMEHASNNLLLETIRDNPQLYIPA 250
+ E + + Q YI A
Sbjct: 178 VVPRPPIPDPPDEDVEELHQKYIAA 202
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 40.7 bits (96), Expect = 4e-04
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 61 VQIEGVDNIPSTGCIIAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI 120
+++ G + P II H S D + + P + K + +P IG G I
Sbjct: 13 IKVHGKPDPPEAPRIIVANHTSFIDPLILFSDLF-PSIVAKKELGKLPFIGTILRALGCI 71
Query: 121 GVKRNSKNLDMKSIINRAKKAV--MDNRQLIIYPEGT 155
V R+ D K ++ K+ + ++I+PEGT
Sbjct: 72 FVDRSEPK-DRKKVVEEIKERATDPNWPPILIFPEGT 107
>gnl|CDD|48045 cd03450, NodN, NodN (nodulation factor N) contains a single hot dog
fold similar to those of the peroxisomal
Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the
fatty acid synthase beta subunit. Rhizobium and related
species form nodules on the roots of their legume hosts,
a symbiotic process that requires production of Nod
factors, which are signal molecules involved in root
hair deformation and meristematic cell division. The
nodulation gene products, including NodN, are involved
in producing the Nod factors, however the role played by
NodN is unclear..
Length = 149
Score = 30.1 bits (68), Expect = 0.60
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 135 INRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHAGLFWPRK 194
I++ A D++ + + PE P + IAH + +LS+ +P +
Sbjct: 29 IDQFADATGDHQWIHVDPERAAAEP-----FGGTIAHGFLTLSL--LPALTPQLFRVEGV 81
Query: 195 KFMRYPGNFKVRVLKPIPAG 214
K G KVR P+P G
Sbjct: 82 KMGVNYGLDKVRFPAPVPVG 101
>gnl|CDD|33207 COG3400, COG3400, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 471
Score = 27.7 bits (61), Expect = 3.2
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%)
Query: 110 IGFYCFKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGI 169
G + +I + S N DM S+I K MD L+ + ++ ++ + + +
Sbjct: 344 SGLSKTFESIIVLNELSINEDMSSVIFDVSK-QMDLGLLLYDFDPNKQYKNEIVNHYRNL 402
Query: 170 AHIY----ESLSVPVIPIVVHAGLFWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQ 225
A + E + + +++ L P FM + R K + K+ F
Sbjct: 403 AKFFDRKIEIFNTDIENPLMYLNLRNPILHFMPFEECLTARRFKWFLSTKLEKLAFLN-- 460
Query: 226 EKMEHASNNLLLETIRDNPQLYIP 249
DNPQ++IP
Sbjct: 461 ---------------DDNPQIFIP 469
>gnl|CDD|30529 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 27.9 bits (62), Expect = 3.4
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 17/106 (16%)
Query: 130 DMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVVHAGL 189
D K+I + KKA D LI Y +G + P ++ IY + + + A
Sbjct: 213 DPKTIRKKIKKAATDGPTLIEYRKGGK--PEVCNLF-----EIYSAFFEDDSILEIEAEY 265
Query: 190 FWPRKKFMRYPGNFKVRVLKPIPAGIPRKIFFAELQEKMEHASNNL 235
R + G K + + I + F +QE+ E +
Sbjct: 266 ---RGGELGC-GECKKELAEAI------QEFLKPIQERREELREDP 301
>gnl|CDD|73373 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl
diphosphate isomerase type 2 (IDI-2) FMN-binding domain.
Two types of IDIs have been characterized at present.
The long known IDI-1 is only dependent on divalent
metals for activity, whereas IDI-2 requires a metal, FMN
and NADPH. IDI-2 catalyzes the interconversion of
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP) in the mevalonate pathway..
Length = 326
Score = 27.4 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 147 QLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVI 181
Q + PEG R G + + I + ++LSVPVI
Sbjct: 152 QEAVQPEGDRDFRG----WLERIEELVKALSVPVI 182
>gnl|CDD|28959 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains..
Length = 352
Score = 27.5 bits (61), Expect = 4.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 211 IPAGIPRKIFFAELQEKMEHASNNLLLETIRDNPQLYIPASTKKALQHLRQ 261
I AG + FF + +++ + S L T D+ LY S+ HL+
Sbjct: 40 IDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKL 90
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.330 0.144 0.446
Gapped
Lambda K H
0.267 0.0845 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,438,929
Number of extensions: 192667
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 67
Length of query: 266
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,275,709
Effective search space: 743973366
Effective search space used: 743973366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.1 bits)