RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764499|ref|YP_003064993.2| 1-acyl-sn-glycerol-3-phosphate
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
>gnl|CDD|128835 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 84.7 bits (210), Expect = 2e-17
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 74 CIIAIKHQSSWDTFY----FLTCIQDPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSKNL 129
++ HQS D F+ K +FY+P++G+ G I + R + L
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKGGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRENGRL 60
Query: 130 DMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVV 185
++ A + + D L+I+PEGTR PG + +KKG A + VP++P+ +
Sbjct: 61 ARAAL-REAVRLLRDGGWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAI 115
>gnl|CDD|178489 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 78.6 bits (194), Expect = 1e-15
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 35 RKQCLYIAKKWAHVNQLLLKYITKTTVQIEGVDNIPS--TGCIIAIKHQSSWDTFYFLTC 92
RK +I K WA ++ +++EG++N+PS + HQS D +
Sbjct: 16 RKAQHFINKVWATLSTSPF-----YKIEVEGLENLPSPDEPAVYVSNHQSFLDIYTLFHL 70
Query: 93 IQDPIFILKHTVFYIPIIGFYCFKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYP 152
+ FI K ++F IPIIG+ + G I +KR + ++ + R + + + +P
Sbjct: 71 GRPFKFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQLECL-KRCMELLKKGASVFFFP 129
Query: 153 EGTRRSPGDMPIYKKGIAHIYESLSVPVIPIV-VHAGLFWPR-KKFMRYPGNFKVRVLKP 210
EGTR G + +KKG + VPV+PI V G P K+ + PG+ KV + P
Sbjct: 130 EGTRSKDGKLAAFKKGAFSVAAKTGVPVVPITLVGTGKIMPNGKEGILNPGSVKVVIHPP 189
Query: 211 I 211
I
Sbjct: 190 I 190
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase.
Length = 130
Score = 72.8 bits (179), Expect = 9e-14
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 61 VQIEGVDNIPS-TGCIIAIKHQSSWDTFYFLTCIQDPI-FILKHTVFYIPIIGFYCFKQG 118
V++ G +N+P+ + ++ HQS+ D PI FI K + +IP G + G
Sbjct: 4 VEVVGPENLPAKSPVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGIMLWLTG 63
Query: 119 MIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSV 178
I + R + + + + A + + R + ++PEGTR D+ +KKG HI V
Sbjct: 64 AIFIDRENIR-AIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKKGAFHIAIKAGV 122
Query: 179 PVIPIVV 185
P++P+V+
Sbjct: 123 PILPVVL 129
>gnl|CDD|181510 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 55.7 bits (135), Expect = 1e-08
Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 39/221 (17%)
Query: 17 IHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQLLLKYI------TKTTVQIEGVDNIP 70
+F + +V L+ T + LL+++ T+ +++EG +NIP
Sbjct: 389 AGLFYLIALVTLIGTLYTLLL----------LPDSLLRFLLLLLMHTRYRLRVEGRENIP 438
Query: 71 STGCIIAIKHQSSW-DTFYFLTCIQDPI-FILKHTVFYIPIIGFYCFKQGMIGVKRNSKN 128
+ G + + + SW D PI F+++ +++ + ++ G+I +
Sbjct: 439 AKGGALLLGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFFKLFGVIPISSGGS- 497
Query: 129 LDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVIPIVV--- 185
K + +KA+ D + I+PEG G + +K+G I + VP+IP +
Sbjct: 498 ---KESLEFIRKALDDGEVVCIFPEGAITRNGQLNEFKRGFELIVKGTDVPIIPFYIRGL 554
Query: 186 --------HAGLFWPRKKFMRYPGNFKVRVL--KPIPAGIP 216
W + YP V V KP+PA
Sbjct: 555 WGSIFSRASGKFLWRWPTRIPYP----VTVAFGKPMPAHST 591
>gnl|CDD|184452 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 49.5 bits (119), Expect = 9e-07
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 9 LIFN-IFFFIHIFIVSMIVLLLCCFITRKQCLYIAKK----WAHVNQLLLKYITKTTVQI 63
LI N +F+ + I I+ ++ LLL R+ C + W +N ++L+ + +T +
Sbjct: 18 LILNTLFWSVPIIILGLLKLLLPIPAIRRACSRLLNFIAEAWISINNVILRLLPRTQWDV 77
Query: 64 EGVDNIPSTG--CIIAIKHQSSWDTF---YFLTC-IQDPIFILKHTVFYIPIIGFYCFKQ 117
EG++ + G +I+ HQS D Y I F LK + ++P +G +
Sbjct: 78 EGLEGLSKKGWYLVIS-NHQSWVDILVLQYVFNRRIPMLKFFLKQELIWVPFLGLAWWAL 136
Query: 118 GMIGVKRNSK 127
+KR SK
Sbjct: 137 DFPFMKRYSK 146
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 47.7 bits (113), Expect = 3e-06
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 15 FFIHIFIVSMIVLLLCCFITRKQCLYIAKKWAHVNQL-----LLKYITKTTVQIEGVDNI 69
+I I+++I +L C CL+ + HV L + V+ +
Sbjct: 2 LYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGRLAPLFGLKVECRKPADA 61
Query: 70 PSTGCIIAI-KHQSSWDTFYFLTCIQDP-IFILKHTVFYIPIIGFYCFKQGMIGVKRNSK 127
S G I I HQ+++D +Q P + + K ++ +IP G + G + + RN++
Sbjct: 62 ESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNNR 121
Query: 128 ---NLDMKSIINRAKKAVMDNRQLIIYPEGTR-RSPGDMPIYKKGIAHIYESLSVPVIPI 183
+ + ++N KK + + ++PEGTR R G +P +K G H + VP+IP+
Sbjct: 122 TKAHGTIAEVVNHFKKRRI---SIWMFPEGTRSRGRGLLP-FKTGAFHAAIAAGVPIIPV 177
Query: 184 VV 185
V
Sbjct: 178 CV 179
>gnl|CDD|180708 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 34.2 bits (79), Expect = 0.034
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 36/140 (25%)
Query: 61 VQIEGVDNIPSTG--CIIAIKHQSSWDTFYFLTCI-QDPIFILKHTV--------F---- 105
V+++G++N+ G +IA H S D + ++P F + + F
Sbjct: 441 VEVKGLENLQKAGKKAVIAANHVSFLDGPLLAAYLPEEPTFAIDTDIAKAWWVKPFLKLA 500
Query: 106 -YIPIIGFYCFKQGMIGVKRNSKNLDMKSIINRAKKAVMDNRQLIIYPEGTRRSPGD-MP 163
+P+ + + +++I K V +L+I+PEG G M
Sbjct: 501 KALPV--------------DPTNPMATRTLI----KEVQKGEKLVIFPEGRITVTGSLMK 542
Query: 164 IYKKGIAHIYESLSVPVIPI 183
IY G I + V+P+
Sbjct: 543 IY-DGPGMIADKAGAMVVPV 561
>gnl|CDD|182645 PRK10682, PRK10682, putrescine transporter subunit:
periplasmic-binding component of ABC superfamily;
Provisional.
Length = 370
Score = 29.8 bits (67), Expect = 0.70
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 207 VLKP-IPAGIPRKIFFAELQEKMEHASNNLLLETIRDNPQLYIPASTKKAL 256
+L+P + A I +F+A + A+ L+ +RDNP +Y PA + L
Sbjct: 299 LLRPDVIAHISDHVFYANANK----AATPLVSAEVRDNPGIYPPADVRAKL 345
>gnl|CDD|162733 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase,
type 2. Isopentenyl-diphosphate delta-isomerase (IPP
isomerase) interconverts isopentenyl diphosphate and
dimethylallyl diphosphate. This model represents the
type 2 enzyme. FMN, NADPH, and Mg2+ are required by this
form, which lacks homology to the type 1 enzyme
(TIGR02150). IPP is precursor to many compounds,
including enzyme cofactors, sterols, and isoprenoids.
Length = 333
Score = 29.2 bits (66), Expect = 1.1
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 23/110 (20%)
Query: 76 IAIKHQSSWDTFYFLTCIQDPIFILKHTVFYIPIIGFYCFKQGMI-GVKRNSKNLDMKSI 134
A+K + DTF + ++ + IG +G + ++ ++
Sbjct: 93 AALKDPETADTFEVVREEAPNGPLIAN-------IGAPQLVEGGPEEAQEAIDMIEADAL 145
Query: 135 I---NRAKKAVMDNRQLIIYPEGTRRSPGDMPIYKKGIAHIYESLSVPVI 181
N ++ V PEG R G + + IA I LSVPVI
Sbjct: 146 AIHLNVLQELVQ--------PEGDRNFKG----WLEKIAEICSQLSVPVI 183
>gnl|CDD|181885 PRK09470, cpxA, two-component sensor protein; Provisional.
Length = 461
Score = 28.7 bits (65), Expect = 1.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 1 MIMIFIRSL---IFNIFFFIHIFIVSMIVLLLCCFITRK 36
+ I SL IF IF+ + +V M+VL+L +R+
Sbjct: 1 KRLPMINSLTARIFAIFWLT-LALVLMLVLMLPKLDSRQ 38
>gnl|CDD|185533 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 28.3 bits (63), Expect = 2.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 67 DNIPSTGCIIAIKHQSSWDTFYF--LTCIQDPI---FILKHTVFYIPIIG 111
D+I GC H S WD + F LT + + ++K ++ IPI G
Sbjct: 124 DDISRHGCAYVGNHTSFWDVYAFIGLTPFRHLLNTRTLMKSSLRKIPIFG 173
>gnl|CDD|152732 pfam12297, EVC2_like, Ellis van Creveld protein 2 like protein.
This family of proteins is found in eukaryotes.
Proteins in this family are typically between 571 and
1310 amino acids in length. There are two conserved
sequence motifs: LPA and ELH. EVC2 is implicated in
Ellis van Creveld chondrodysplastic dwarfism in humans.
Mutations in this protein can give rise to this
congenital condition. LIMBIN is a protein which shares
around 80% sequence homology with EVC2 and it is
implicated in a similar condition in bovine
chondrodysplastic dwarfism.
Length = 429
Score = 27.5 bits (61), Expect = 3.6
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 16 FIHIFIVSMIVLLLCCFI-TRKQCL 39
F+ F+VS+++ LL F+ R +CL
Sbjct: 70 FVVAFLVSIVLTLLAFFLLGRTRCL 94
>gnl|CDD|131900 TIGR02853, spore_dpaA, dipicolinic acid synthetase, A subunit.
This predicted Rossman fold-containing protein is the A
subunit of dipicolinic acid synthetase as found in most,
though not all, endospore-forming low-GC Gram-positive
bacteria; it is absent in Clostridium. The B subunit is
represented by TIGR02852. This protein is also known as
SpoVFA.
Length = 287
Score = 27.4 bits (61), Expect = 4.0
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 107 IPIIGFYCFKQGMIGV-KRNSKNLDMKSI---------INRAKK--AVMDNRQLIIYPEG 154
I +IGF + G G K LD+ ++ + K V N ++++ PE
Sbjct: 27 ISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPEL 86
Query: 155 TRRSPGDMPIYKKGIAHIY 173
+ G IY GI++ Y
Sbjct: 87 LESTKGHCTIY-VGISNPY 104
>gnl|CDD|161756 TIGR00194, uvrC, excinuclease ABC, C subunit. This family consists
of the DNA repair enzyme UvrC, an ABC excinuclease
subunit which interacts with the UvrA/UvrB complex to
excise UV-damaged nucleotide segments.
Length = 574
Score = 27.3 bits (61), Expect = 4.1
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 223 ELQEKMEHASNNLLLET---IRD 242
EL++KME AS NL E IRD
Sbjct: 198 ELEQKMEKASENLEFEEAARIRD 220
>gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 1403
Score = 27.1 bits (60), Expect = 4.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 220 FFAELQEKMEHASNNLLLETIRDNPQLYIPASTKKALQHLRQ 261
F A Q+K + N L + + + PAS ++A+ L++
Sbjct: 685 FTARSQDKTSPEAINRLASALFNGDEGSAPASVREAVTKLKE 726
>gnl|CDD|151239 pfam10778, DehI, Halocarboxylic acid dehydrogenase DehI. Haloacid
dehalogenases catalyse the removal of halides from
organic haloacids. DehI can process both L- and
D-substrates. A crucial aspartate residue is predicted
to activate a water molecule for nucleophilic attack of
the substrate chiral centre resulting in an inversion of
the configuration of either L- or D-substrates in
contrast to D-only enzymes.
Length = 159
Score = 27.0 bits (60), Expect = 4.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 211 IPAGIPRKIFFAELQEKMEHAS--NNLLLETIRDNPQLYIPAS 251
IP G+P + L + E AS LL+ IRD L+ PAS
Sbjct: 116 IPRGLPAGMEPPHLVD-EEEASERTQGLLDDIRDTLALHGPAS 157
>gnl|CDD|149867 pfam08933, DUF1864, Domain of unknown function (DUF1864). This
domain has no known function. It is found in various
hypothetical and conserved domain proteins.
Length = 387
Score = 26.2 bits (58), Expect = 7.7
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 47 HVNQLLLKYITKTTVQIE 64
H QL+LK+I + +E
Sbjct: 320 HHFQLVLKFIAPPSKLME 337
>gnl|CDD|179065 PRK00558, uvrC, excinuclease ABC subunit C; Validated.
Length = 598
Score = 26.2 bits (59), Expect = 9.6
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 15/45 (33%)
Query: 222 AELQEKMEHASNNLLLET---IRDNPQLYIPASTKKALQHLRQIQ 263
EL+EKME AS NL E RD Q +Q LR++Q
Sbjct: 205 KELEEKMEEASENLEFERAARYRD--Q----------IQALRRVQ 237
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.330 0.144 0.446
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,412,850
Number of extensions: 284834
Number of successful extensions: 988
Number of sequences better than 10.0: 1
Number of HSP's gapped: 971
Number of HSP's successfully gapped: 52
Length of query: 266
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,006,537
Effective search space: 697137438
Effective search space used: 697137438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.4 bits)