Query gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 18:40:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764500.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cl6_A PUUE allantoinase; URIC 37.3 8.5 0.00036 17.9 0.9 63 130-192 123-191 (308)
2 1yo3_A Dynein light chain 1; s 18.9 43 0.0018 13.5 2.4 53 72-132 4-56 (102)
3 3fgx_A Rbstp2171; structural g 13.7 54 0.0023 12.9 1.2 10 114-123 49-58 (114)
4 3b5i_A S-adenosyl-L-methionine 11.5 68 0.0029 12.3 1.9 32 12-46 67-98 (374)
5 2efj_A 3,7-dimethylxanthine me 8.8 85 0.0036 11.7 1.8 38 146-183 191-228 (384)
6 1ssq_A SAT, serine acetyltrans 8.4 89 0.0037 11.6 2.6 39 113-151 90-128 (267)
7 1co4_A AMT1, protein (activato 8.3 88 0.0037 11.6 0.7 15 25-42 19-33 (42)
8 3ggy_A Increased sodium tolera 8.0 93 0.0039 11.4 1.5 18 123-141 105-123 (193)
9 1brv_A Protein G, BRSV-G regio 7.9 94 0.0039 11.4 0.9 15 58-72 3-17 (32)
10 3c3r_A Programmed cell death 6 7.9 94 0.0039 11.4 1.1 39 153-192 223-261 (380)
No 1
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=37.33 E-value=8.5 Score=17.90 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf 99877651444553068989877640777988665543------1122433345433043323311100
Q gi|255764500|r 130 IIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQA------ANQKAADMLMLATYGLQYDDSLTKI 192 (200)
Q Consensus 130 iiwhryqhmdykgkteqekralakqsrddfqryataqa------anqkaadmlmlatyglqyddsltki 192 (200)
|..|-|.|.++.+-++.+.++.-+++.+-+++..-... ...-.....+|+..|+.||-|+..-
T Consensus 123 i~~HG~~h~~~~~l~~~~e~~~i~~~~~~l~~~tG~~p~G~~~p~~~~~~t~~LL~e~Gf~Y~ss~~~d 191 (308)
T 3cl6_A 123 ICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERPLGWYTGRTGPNTRRLVMEEGGFLYDCDTYDD 191 (308)
T ss_dssp EEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSSCCSEECCSSCCTTHHHHHHHHCCCSEECCCCCC
T ss_pred HHHCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHCCCEEECCCCCC
T ss_conf 765702110544589999999999999999988099976570899999738889872397897777777
No 2
>1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A
Probab=18.88 E-value=43 Score=13.50 Aligned_cols=53 Identities=26% Similarity=0.274 Sum_probs=36.7
Q ss_pred CCCCCCCCCCHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8656543321010028610024726874206224568877886665432141789999998
Q gi|255764500|r 72 SENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIW 132 (200)
Q Consensus 72 sennahgdepikksekptfrrnqpvienlrkpteaekekilaardryqktnneeaiasiiw 132 (200)
++|.-||+.-+ --..+||..-.-|.+-..+-+-.+....++-+++..||..|=
T Consensus 4 ~~~~~~~~~~~--------~~~k~vIk~~DM~~emq~~ai~~a~~Al~k~~~e~diA~~IK 56 (102)
T 1yo3_A 4 SHHHHHHSSGL--------VPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIK 56 (102)
T ss_dssp ----------------------CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred CCCCCCCCCCC--------CCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 43333333365--------666777997899999999999999999987497199999999
No 3
>3fgx_A Rbstp2171; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.90A {Bacillus stearothermophilus}
Probab=13.73 E-value=54 Score=12.90 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=6.0
Q ss_pred HHHHHHHCCC
Q ss_conf 6665432141
Q gi|255764500|r 114 ARDRYQKTNN 123 (200)
Q Consensus 114 ardryqktnn 123 (200)
.-|||+||-+
T Consensus 49 ~~dRy~ktaa 58 (114)
T 3fgx_A 49 DISRFTKELN 58 (114)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 5999999984
No 4
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=11.54 E-value=68 Score=12.28 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 10058988977741355776754389731132057
Q gi|255764500|r 12 KLGIVSVLIPVVLGVSNCDHSDSQHPPVIPILKDD 46 (200)
Q Consensus 12 klgivsvlipvvlgvsncdhsdsqhppvipilkdd 46 (200)
-|..++-+|-.+-. .|... .+.||-|-+.-.|
T Consensus 67 tl~~v~~ii~~i~~--~~~~~-~~~~pe~qv~~nD 98 (374)
T 3b5i_A 67 TVHIIDFIVKHISK--RFDAA-GIDPPEFTAFFSD 98 (374)
T ss_dssp HHHHHHHHHHHHHH--HHHHT-TCCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHH--HHHHC-CCCCCCEEEEECC
T ss_conf 89999999999999--87642-8999808998478
No 5
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=8.82 E-value=85 Score=11.67 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89898776407779886655431122433345433043
Q gi|255764500|r 146 QEKRALAKQSRDDFQRYATAQAANQKAADMLMLATYGL 183 (200)
Q Consensus 146 qekralakqsrddfqryataqaanqkaadmlmlatygl 183 (200)
....|.++|.+.||.++-.+.|..-+....+.|...|.
T Consensus 191 ~v~~ay~~Q~~~D~~~FL~~Ra~ELv~GG~mvl~~~gr 228 (384)
T 2efj_A 191 PIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99999999999999999999999846687599984356
No 6
>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*
Probab=8.40 E-value=89 Score=11.56 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=21.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 866654321417899999987765144455306898987
Q gi|255764500|r 113 AARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKRAL 151 (200)
Q Consensus 113 aardryqktnneeaiasiiwhryqhmdykgkteqekral 151 (200)
|++.+.+..-.-.....+.|||..|--|+.+-..-.+.+
T Consensus 90 A~~~~~~~~l~~~gf~al~~yR~ah~l~~~~~~~la~~i 128 (267)
T 1ssq_A 90 AVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYL 128 (267)
T ss_dssp TCCCTHHHHHHCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 656613223237608999999999999982008889999
No 7
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=8.28 E-value=88 Score=11.57 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCCEEEE
Q ss_conf 135577675438973113
Q gi|255764500|r 25 GVSNCDHSDSQHPPVIPI 42 (200)
Q Consensus 25 gvsncdhsdsqhppvipi 42 (200)
-+|.|.|+|. |.+.|
T Consensus 19 R~S~C~H~dR---pL~~v 33 (42)
T 1co4_A 19 KAAQCEHNDR---PLKIL 33 (42)
T ss_dssp GGGGCCCCSS---CEEEE
T ss_pred CCCCCCCCCC---CCEEE
T ss_conf 2254535886---34661
No 8
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=7.95 E-value=93 Score=11.43 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHHC-CCC
Q ss_conf 1789999998776514-445
Q gi|255764500|r 123 NEEAIASIIWHRYQHM-DYK 141 (200)
Q Consensus 123 neeaiasiiwhryqhm-dyk 141 (200)
-.|||+||||-- .+. |.+
T Consensus 105 l~EAvsslIyAa-~r~~e~p 123 (193)
T 3ggy_A 105 INEAIRSLIYAI-LFVDEVK 123 (193)
T ss_dssp HHHHHHHHHHHG-GGCTTCT
T ss_pred HHHHHHHHHHCC-CCCCCCH
T ss_conf 889999998605-2356677
No 9
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=7.87 E-value=94 Score=11.41 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 875655489857778
Q gi|255764500|r 58 LDHSDSQHPPVLPNS 72 (200)
Q Consensus 58 ldhsdsqhppvlpns 72 (200)
-||+++|.-|-.|-|
T Consensus 3 qdh~n~qtlpyvpcs 17 (32)
T 1brv_A 3 QDHNNFQTLPYVPCS 17 (32)
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 354654304654542
No 10
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, cytoplasm, HOST-virus interaction, polymorphism; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=7.85 E-value=94 Score=11.40 Aligned_cols=39 Identities=41% Similarity=0.398 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf 6407779886655431122433345433043323311100
Q gi|255764500|r 153 KQSRDDFQRYATAQAANQKAADMLMLATYGLQYDDSLTKI 192 (200)
Q Consensus 153 kqsrddfqryataqaanqkaadmlmlatyglqyddsltki 192 (200)
|..||....-..|.-||| |||..--|--..||.|.|.|-
T Consensus 223 katrdkmkdaiiaklanq-aadyfgdafkqcqykdtlpke 261 (380)
T 3c3r_A 223 KATRDKMKDAIIAKLANQ-AADYFGDAFKQCQYKDTLPKE 261 (380)
T ss_dssp HHHHTTCCHHHHHHHHHH-HHHHHHHHHHHHTTCCCSCTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCHH
T ss_conf 750777888999999877-788887898853133657067
Done!