Query gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 200 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 09:39:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764500.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1z7aa1 c.6.2.6 (A:4-304) Hypo 36.4 4.8 0.00035 17.9 0.7 62 130-191 120-187 (301) 2 d1e6yb2 d.58.31.2 (B:2002-2185 13.6 32 0.0023 12.9 1.2 19 118-136 72-90 (184) 3 d1e6vb2 d.58.31.2 (B:7-189) Be 13.0 34 0.0025 12.7 1.2 18 118-135 71-88 (183) 4 d1hbnb2 d.58.31.2 (B:2-188) Be 13.0 34 0.0025 12.7 1.2 19 118-136 75-93 (187) 5 d1co4a_ g.47.1.1 (A:) Zinc dom 8.7 48 0.0035 11.7 0.7 15 25-42 19-33 (42) 6 d1yu0a2 d.169.1.8 (A:171-380) 5.8 69 0.005 10.8 1.4 16 99-116 79-94 (210) 7 d3cx5g1 f.27.1.1 (G:3-127) 14 5.7 69 0.0051 10.7 0.6 11 179-189 37-47 (125) 8 d1ssqa_ b.81.1.6 (A:) Serine a 5.3 74 0.0054 10.5 2.6 55 91-145 68-122 (241) 9 d1mr1c_ d.217.1.2 (C:) SMAD4-b 5.2 75 0.0055 10.5 1.3 17 132-148 66-84 (97) 10 d3e2ba1 d.39.1.1 (A:3-89) Dyne 4.9 79 0.0057 10.4 1.7 38 95-132 4-41 (87) No 1 >d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} Probab=36.39 E-value=4.8 Score=17.94 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=44.8 Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 998776514445530689898776407779886655431------12243334543304332331110 Q gi|255764500|r 130 IIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQAA------NQKAADMLMLATYGLQYDDSLTK 191 (200) Q Consensus 130 iiwhryqhmdykgkteqekralakqsrddfqryataqaa------nqkaadmlmlatyglqyddsltk 191 (200) |..|-|.|..+.+-++.+.|+.-+++.+-+.+..-.... ..-....++|+..|+.|+-|+.- T Consensus 120 i~~HG~~h~~~~~l~~~~e~~~i~~~~~~l~~~tG~~p~G~~~p~~~~~~t~~lL~e~Gf~Y~sd~~~ 187 (301) T d1z7aa1 120 ICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGQRPVGWYTGRTGPNTRRLVMEEGGFLYDSDTYD 187 (301) T ss_dssp EEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSSCCCEECCSSCCTTHHHHHHHHCCCSEECCCCC T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCC T ss_conf 10374323233447889999999999999997606785131589998751999998509779887878 No 2 >d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]} Probab=13.63 E-value=32 Score=12.85 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=8.6 Q ss_pred HHHCCCHHHHHHHHHHHHH Q ss_conf 4321417899999987765 Q gi|255764500|r 118 YQKTNNEEAIASIIWHRYQ 136 (200) Q Consensus 118 yqktnneeaiasiiwhryq 136 (200) |.-..|-||||.-|-.-.| T Consensus 72 ldiv~nA~aIa~kik~mvq 90 (184) T d1e6yb2 72 YDIVGNADAIAENVKKLVQ 90 (184) T ss_dssp CCTGGGHHHHHHHHHHHHC T ss_pred CCCCCCHHHHHHHHHHHHE T ss_conf 7310378999999999836 No 3 >d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Probab=12.97 E-value=34 Score=12.66 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=8.1 Q ss_pred HHHCCCHHHHHHHHHHHH Q ss_conf 432141789999998776 Q gi|255764500|r 118 YQKTNNEEAIASIIWHRY 135 (200) Q Consensus 118 yqktnneeaiasiiwhry 135 (200) |.-..|-||||.-|-.-. T Consensus 71 ldIv~na~aIa~kik~mv 88 (183) T d1e6vb2 71 VDIVDNAEAIADEIEKMI 88 (183) T ss_dssp CCCGGGHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHH T ss_conf 731126899999999984 No 4 >d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=12.97 E-value=34 Score=12.66 Aligned_cols=19 Identities=26% Similarity=0.192 Sum_probs=9.4 Q ss_pred HHHCCCHHHHHHHHHHHHH Q ss_conf 4321417899999987765 Q gi|255764500|r 118 YQKTNNEEAIASIIWHRYQ 136 (200) Q Consensus 118 yqktnneeaiasiiwhryq 136 (200) |.-..|-||||.-|-.-.| T Consensus 75 ldiv~nA~aIa~kik~mvq 93 (187) T d1hbnb2 75 LDIVGNAESIAAAAKEMIQ 93 (187) T ss_dssp CCTGGGHHHHHHHHHHHHC T ss_pred CCCCCCHHHHHHHHHHHHE T ss_conf 7310378999999999836 No 5 >d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic} Probab=8.67 E-value=48 Score=11.73 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=10.0 Q ss_pred CCCCCCCCCCCCCCEEEE Q ss_conf 135577675438973113 Q gi|255764500|r 25 GVSNCDHSDSQHPPVIPI 42 (200) Q Consensus 25 gvsncdhsdsqhppvipi 42 (200) -+|+|.|+|. |.+.| T Consensus 19 RsS~C~H~dR---pL~~v 33 (42) T d1co4a_ 19 KAAQCEHNDR---PLKIL 33 (42) T ss_dssp GGGGCCCCSS---CEEEE T ss_pred CCCCCCCCCC---CCEEE T ss_conf 3264425886---45750 No 6 >d1yu0a2 d.169.1.8 (A:171-380) Major tropism determinant (Mtd), C-terminal domain {Bordetella phage bpp-1 [TaxId: 194699]} Probab=5.82 E-value=69 Score=10.75 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=12.3 Q ss_pred HHHCCCHHHHHHHHHHHH Q ss_conf 420622456887788666 Q gi|255764500|r 99 NLRKPTEAEKEKILAARD 116 (200) Q Consensus 99 nlrkpteaekekilaard 116 (200) +.|-|||+|=|+ |||. T Consensus 79 GkRLPTEaEWe~--AA~g 94 (210) T d1yu0a2 79 GKRLPNYNEFQA--LAFG 94 (210) T ss_dssp TCBCCCHHHHHH--HHTT T ss_pred CCCCCCHHHHHH--HHHC T ss_conf 889959999999--9726 No 7 >d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=5.75 E-value=69 Score=10.73 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=5.2 Q ss_pred HHHCCCCCCCH Q ss_conf 33043323311 Q gi|255764500|r 179 ATYGLQYDDSL 189 (200) Q Consensus 179 atyglqyddsl 189 (200) -.|||.|||-+ T Consensus 37 rk~GL~~DDli 47 (125) T d3cx5g1 37 KKLGLKFDDLI 47 (125) T ss_dssp GGGTCCGGGGS T ss_pred HHCCCCHHHCC T ss_conf 03167586466 No 8 >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Probab=5.28 E-value=74 Score=10.55 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=25.9 Q ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 0247268742062245688778866654321417899999987765144455306 Q gi|255764500|r 91 RRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTE 145 (200) Q Consensus 91 rrnqpvienlrkpteaekekilaardryqktnneeaiasiiwhryqhmdykgkte 145 (200) ..+.-+++.+|.--+|-.|+=-|++...+---.-.....+.|||..|--|+-+.. T Consensus 68 ~~~~~i~~~~~~Dl~a~~~rDpa~~~~~~~~L~~~Gf~Al~~yRiah~l~~~~~~ 122 (241) T d1ssqa_ 68 QSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRK 122 (241) T ss_dssp HHCTHHHHHHHHHHHHHHHHCTTCCCTHHHHHHCHHHHHHHHHHHHHHHHTTTCH T ss_pred HCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6477899999999999971485326423211010467899987652144552048 No 9 >d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski {Human (Homo sapiens) [TaxId: 9606]} Probab=5.22 E-value=75 Score=10.52 Aligned_cols=17 Identities=47% Similarity=1.025 Sum_probs=12.9 Q ss_pred HHHHHHC--CCCCCCHHHH Q ss_conf 8776514--4455306898 Q gi|255764500|r 132 WHRYQHM--DYKGKTEQEK 148 (200) Q Consensus 132 whryqhm--dykgkteqek 148 (200) |++|-+. ||.|+.+.++ T Consensus 66 WR~yL~L~~d~~~~~~~~~ 84 (97) T d1mr1c_ 66 WRAYILLSQDYTGKEEQAR 84 (97) T ss_dssp HHHHCEECTTCCCTTHHHH T ss_pred HHHHEEECCCCCCCCHHHH T ss_conf 6666151455678407999 No 10 >d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=4.89 E-value=79 Score=10.38 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=25.0 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 26874206224568877886665432141789999998 Q gi|255764500|r 95 PVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIW 132 (200) Q Consensus 95 pvienlrkpteaekekilaardryqktnneeaiasiiw 132 (200) +||..-.-|.|-..+-+-.+..-.++-+++..||..|= T Consensus 4 ~vik~~DM~~em~~~a~~~~~~al~~~~~~~diA~~IK 41 (87) T d3e2ba1 4 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIK 41 (87) T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHCCSHHHHHHHHH T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 55997799989999999999999997695899999999 Done!