Query         gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 09:39:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764500.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1z7aa1 c.6.2.6 (A:4-304) Hypo  36.4     4.8 0.00035   17.9   0.7   62  130-191   120-187 (301)
  2 d1e6yb2 d.58.31.2 (B:2002-2185  13.6      32  0.0023   12.9   1.2   19  118-136    72-90  (184)
  3 d1e6vb2 d.58.31.2 (B:7-189) Be  13.0      34  0.0025   12.7   1.2   18  118-135    71-88  (183)
  4 d1hbnb2 d.58.31.2 (B:2-188) Be  13.0      34  0.0025   12.7   1.2   19  118-136    75-93  (187)
  5 d1co4a_ g.47.1.1 (A:) Zinc dom   8.7      48  0.0035   11.7   0.7   15   25-42     19-33  (42)
  6 d1yu0a2 d.169.1.8 (A:171-380)    5.8      69   0.005   10.8   1.4   16   99-116    79-94  (210)
  7 d3cx5g1 f.27.1.1 (G:3-127) 14    5.7      69  0.0051   10.7   0.6   11  179-189    37-47  (125)
  8 d1ssqa_ b.81.1.6 (A:) Serine a   5.3      74  0.0054   10.5   2.6   55   91-145    68-122 (241)
  9 d1mr1c_ d.217.1.2 (C:) SMAD4-b   5.2      75  0.0055   10.5   1.3   17  132-148    66-84  (97)
 10 d3e2ba1 d.39.1.1 (A:3-89) Dyne   4.9      79  0.0057   10.4   1.7   38   95-132     4-41  (87)

No 1  
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.39  E-value=4.8  Score=17.94  Aligned_cols=62  Identities=18%  Similarity=0.269  Sum_probs=44.8

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             998776514445530689898776407779886655431------12243334543304332331110
Q gi|255764500|r  130 IIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQAA------NQKAADMLMLATYGLQYDDSLTK  191 (200)
Q Consensus       130 iiwhryqhmdykgkteqekralakqsrddfqryataqaa------nqkaadmlmlatyglqyddsltk  191 (200)
                      |..|-|.|..+.+-++.+.|+.-+++.+-+.+..-....      ..-....++|+..|+.|+-|+.-
T Consensus       120 i~~HG~~h~~~~~l~~~~e~~~i~~~~~~l~~~tG~~p~G~~~p~~~~~~t~~lL~e~Gf~Y~sd~~~  187 (301)
T d1z7aa1         120 ICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGQRPVGWYTGRTGPNTRRLVMEEGGFLYDSDTYD  187 (301)
T ss_dssp             EEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSSCCCEECCSSCCTTHHHHHHHHCCCSEECCCCC
T ss_pred             EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCC
T ss_conf             10374323233447889999999999999997606785131589998751999998509779887878


No 2  
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=13.63  E-value=32  Score=12.85  Aligned_cols=19  Identities=32%  Similarity=0.340  Sum_probs=8.6

Q ss_pred             HHHCCCHHHHHHHHHHHHH
Q ss_conf             4321417899999987765
Q gi|255764500|r  118 YQKTNNEEAIASIIWHRYQ  136 (200)
Q Consensus       118 yqktnneeaiasiiwhryq  136 (200)
                      |.-..|-||||.-|-.-.|
T Consensus        72 ldiv~nA~aIa~kik~mvq   90 (184)
T d1e6yb2          72 YDIVGNADAIAENVKKLVQ   90 (184)
T ss_dssp             CCTGGGHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHE
T ss_conf             7310378999999999836


No 3  
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=12.97  E-value=34  Score=12.66  Aligned_cols=18  Identities=33%  Similarity=0.220  Sum_probs=8.1

Q ss_pred             HHHCCCHHHHHHHHHHHH
Q ss_conf             432141789999998776
Q gi|255764500|r  118 YQKTNNEEAIASIIWHRY  135 (200)
Q Consensus       118 yqktnneeaiasiiwhry  135 (200)
                      |.-..|-||||.-|-.-.
T Consensus        71 ldIv~na~aIa~kik~mv   88 (183)
T d1e6vb2          71 VDIVDNAEAIADEIEKMI   88 (183)
T ss_dssp             CCCGGGHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
T ss_conf             731126899999999984


No 4  
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.97  E-value=34  Score=12.66  Aligned_cols=19  Identities=26%  Similarity=0.192  Sum_probs=9.4

Q ss_pred             HHHCCCHHHHHHHHHHHHH
Q ss_conf             4321417899999987765
Q gi|255764500|r  118 YQKTNNEEAIASIIWHRYQ  136 (200)
Q Consensus       118 yqktnneeaiasiiwhryq  136 (200)
                      |.-..|-||||.-|-.-.|
T Consensus        75 ldiv~nA~aIa~kik~mvq   93 (187)
T d1hbnb2          75 LDIVGNAESIAAAAKEMIQ   93 (187)
T ss_dssp             CCTGGGHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHE
T ss_conf             7310378999999999836


No 5  
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=8.67  E-value=48  Score=11.73  Aligned_cols=15  Identities=27%  Similarity=0.753  Sum_probs=10.0

Q ss_pred             CCCCCCCCCCCCCCEEEE
Q ss_conf             135577675438973113
Q gi|255764500|r   25 GVSNCDHSDSQHPPVIPI   42 (200)
Q Consensus        25 gvsncdhsdsqhppvipi   42 (200)
                      -+|+|.|+|.   |.+.|
T Consensus        19 RsS~C~H~dR---pL~~v   33 (42)
T d1co4a_          19 KAAQCEHNDR---PLKIL   33 (42)
T ss_dssp             GGGGCCCCSS---CEEEE
T ss_pred             CCCCCCCCCC---CCEEE
T ss_conf             3264425886---45750


No 6  
>d1yu0a2 d.169.1.8 (A:171-380) Major tropism determinant (Mtd), C-terminal domain {Bordetella phage bpp-1 [TaxId: 194699]}
Probab=5.82  E-value=69  Score=10.75  Aligned_cols=16  Identities=25%  Similarity=0.121  Sum_probs=12.3

Q ss_pred             HHHCCCHHHHHHHHHHHH
Q ss_conf             420622456887788666
Q gi|255764500|r   99 NLRKPTEAEKEKILAARD  116 (200)
Q Consensus        99 nlrkpteaekekilaard  116 (200)
                      +.|-|||+|=|+  |||.
T Consensus        79 GkRLPTEaEWe~--AA~g   94 (210)
T d1yu0a2          79 GKRLPNYNEFQA--LAFG   94 (210)
T ss_dssp             TCBCCCHHHHHH--HHTT
T ss_pred             CCCCCCHHHHHH--HHHC
T ss_conf             889959999999--9726


No 7  
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.75  E-value=69  Score=10.73  Aligned_cols=11  Identities=36%  Similarity=0.818  Sum_probs=5.2

Q ss_pred             HHHCCCCCCCH
Q ss_conf             33043323311
Q gi|255764500|r  179 ATYGLQYDDSL  189 (200)
Q Consensus       179 atyglqyddsl  189 (200)
                      -.|||.|||-+
T Consensus        37 rk~GL~~DDli   47 (125)
T d3cx5g1          37 KKLGLKFDDLI   47 (125)
T ss_dssp             GGGTCCGGGGS
T ss_pred             HHCCCCHHHCC
T ss_conf             03167586466


No 8  
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}
Probab=5.28  E-value=74  Score=10.55  Aligned_cols=55  Identities=13%  Similarity=0.043  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             0247268742062245688778866654321417899999987765144455306
Q gi|255764500|r   91 RRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTE  145 (200)
Q Consensus        91 rrnqpvienlrkpteaekekilaardryqktnneeaiasiiwhryqhmdykgkte  145 (200)
                      ..+.-+++.+|.--+|-.|+=-|++...+---.-.....+.|||..|--|+-+..
T Consensus        68 ~~~~~i~~~~~~Dl~a~~~rDpa~~~~~~~~L~~~Gf~Al~~yRiah~l~~~~~~  122 (241)
T d1ssqa_          68 QSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRK  122 (241)
T ss_dssp             HHCTHHHHHHHHHHHHHHHHCTTCCCTHHHHHHCHHHHHHHHHHHHHHHHTTTCH
T ss_pred             HCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6477899999999999971485326423211010467899987652144552048


No 9  
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.22  E-value=75  Score=10.52  Aligned_cols=17  Identities=47%  Similarity=1.025  Sum_probs=12.9

Q ss_pred             HHHHHHC--CCCCCCHHHH
Q ss_conf             8776514--4455306898
Q gi|255764500|r  132 WHRYQHM--DYKGKTEQEK  148 (200)
Q Consensus       132 whryqhm--dykgkteqek  148 (200)
                      |++|-+.  ||.|+.+.++
T Consensus        66 WR~yL~L~~d~~~~~~~~~   84 (97)
T d1mr1c_          66 WRAYILLSQDYTGKEEQAR   84 (97)
T ss_dssp             HHHHCEECTTCCCTTHHHH
T ss_pred             HHHHEEECCCCCCCCHHHH
T ss_conf             6666151455678407999


No 10 
>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.89  E-value=79  Score=10.38  Aligned_cols=38  Identities=29%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             26874206224568877886665432141789999998
Q gi|255764500|r   95 PVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIW  132 (200)
Q Consensus        95 pvienlrkpteaekekilaardryqktnneeaiasiiw  132 (200)
                      +||..-.-|.|-..+-+-.+..-.++-+++..||..|=
T Consensus         4 ~vik~~DM~~em~~~a~~~~~~al~~~~~~~diA~~IK   41 (87)
T d3e2ba1           4 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIK   41 (87)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             55997799989999999999999997695899999999


Done!