RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764500|ref|YP_003064987.2| hypothetical protein
CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>gnl|CDD|38822 KOG3616, KOG3616, KOG3616, Selective LIM binding factor
            [Transcription].
          Length = 1636

 Score = 26.3 bits (57), Expect = 5.9
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 48   NDGEPRKPTPLDHSDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQP------VIEN-- 99
            ND    +     H +     VL      A  +    K+E    R N+P       IE   
Sbjct: 1061 NDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAEL 1120

Query: 100  ----LRKPTEAEKEKILAARDRYQKT---NNEEAIASIIWHRYQHMDYKGKTEQEKRALA 152
                LR   +    +  A ++ Y+K         +   +  + +  +  G   +   AL 
Sbjct: 1121 WPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFV-AQAKEWEQAGDWRKAVDALL 1179

Query: 153  KQSRDDFQRYATAQAANQKAADMLM 177
            K +RD     A A+   +KAAD+ +
Sbjct: 1180 KINRDSTDNDALAEHCTEKAADLSI 1204


>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase.
           L-sorbose-1-phosphate reductase, a member of the MDR
           family, catalyzes the NADPH-dependent conversion of
           l-sorbose 1-phosphate to d-glucitol 6-phosphate in the
           metabolism of L-sorbose to  (also converts d-fructose
           1-phosphate to d-mannitol 6-phosphate).  The medium
           chain dehydrogenases/reductase (MDR)/zinc-dependent
           alcohol dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of an
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol  dehydrogenases
           (ADHs) catalyze the  NAD(P)(H)-dependent interconversion
           of alcohols to aldehydes or ketones. Active site zinc
           has a catalytic role, while structural zinc aids in
           stability.
          Length = 410

 Score = 26.2 bits (58), Expect = 6.1
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 167 AANQKAADMLMLATYGLQYDDSLTKIQDPPKMEE 200
           A        LM  T G  +DD    +  P  +EE
Sbjct: 240 ATIDDLHATLMELTGGQGFDDVFVFVPVPELVEE 273


>gnl|CDD|176081 cd08531, SAM_PNT-ERG_FLI-1, Sterile alpha motif (SAM)/Pointed
           domain of ERG (Ets related gene) and FLI-1 (Friend
           leukemia integration 1) transcription factors.  SAM
           Pointed domain of ERG/FLI-1 subfamily of ETS
           transcriptional regulators is a putative protein-protein
           interaction domain. The ERG and FLI regulators are
           involved in endothelial cell differentiation, bone
           morphogenesis and neural crest development. They are
           proto-oncogenes implicated in cancer development such as
           myeloid leukemia, Ewing's sarcoma and erythroleukemia.
           Members of this subfamily are potential targets for
           cancer therapy.
          Length = 75

 Score = 25.7 bits (57), Expect = 8.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 13/45 (28%)

Query: 133 HRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLM 177
            R+Q++D  GK       L K +++DF R  +A       AD+L+
Sbjct: 32  SRFQNID--GK------ELCKMTKEDFLRLTSA-----YNADVLL 63


>gnl|CDD|35679 KOG0458, KOG0458, KOG0458, Elongation factor 1 alpha [Translation,
           ribosomal structure and biogenesis].
          Length = 603

 Score = 25.7 bits (56), Expect = 9.2
 Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 30  DHSDSQHPPVIPILKDDKNDGEPRKPTPLDHSDSQHPPVLPNSENNAHGDEP---IKKSE 86
           D  +S+ P       +D N     K      S S H      S   +    P    K+ E
Sbjct: 29  DEENSEDPSSSTNDDNDTNFPVLEKQHTDKLSLSYHELKKSPSSFPSTQQSPSKTEKEKE 88

Query: 87  KPTFRR--NQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIAS 129
               ++   +P+ E        +            K + E+  A 
Sbjct: 89  TEPKKKKPKKPIKEANASAKVPQTSSNSNIPKHTPKVSLEQFNAP 133


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,412,951
Number of extensions: 118240
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 20
Length of query: 200
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,340,536
Effective search space: 481799496
Effective search space used: 481799496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)